Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02874 ATGTATGTGTCCTTGTATCCATTGTGCATAATACAGGTGGATGCTGAAAGATCAGCTAGACGGGTGTCACTTGGTGGAGGGAAGAACTTACAATTTGATGGGGCTATGTTCAATGAATCTGGTGGTGATTCAGAGGCAGTTTGGTCTCACAATGATGGCACTGTTTGGGATCTTATTCCTGACACAAAAGAAACCCTCTATCCCCATCAACAAGAAGGATTTGAGTTTATCTGGGAAAATTTGGCAGGAACCACCGATCTTGCCAAACTAAAGAGGGTTGATCCGCAGGGTGAAGGTGGTTGTATTATTTCTCATGCTCCTGGGACTGGAAAGACAAGGTTGACAATGGTGTTTCTTCAGTCATATTTGCAATTGTTTCCAAAGTGTCTACCTGTTATTATTGCTCCTTCCAACATCTTGCTTAGTTGGGAAGATGAGTTAAGGAAGTGGAATGTAGGAATTCCATTCCATAACTTGAACAGTTCTGAACTATCAGGAAAAGAGGAAGATATTAATGTAGTTGATTGGTCTGGCAATCAAAGGCAGAAAAGCGATGCCATTAGAATGCTCAAATTATGTTCATGGTACAATGAGAAGAAGAGCATTCTGTTGATTAGTTATAATTTATATGAGAAGCTAGCAGGTGGAAAGTCTGAAGGTGATGAGGAAAAAGAGAAAAAAAATAGAAAGATTAAAAACCAGAAGAAACGCGCAAGGTCTAGGGAGCCTATTGATAGTGCAATGGGCAAGGTTCTGCGTGAGTTTCCTGGTTTATTGGTTCTTGATGAAGGGCACACACCAAGGAATCATCGTAGCTGTATTTGGAAGGGTCTCTCAGAAAGTAGAAGTCAGAAGCGGATCATTCTTTCAGGGACTCCTTTCCAGAACAATTTTGTAGAACTCTACAATGTTTTGTGCTTGATGAAACCATCCTTTCCTGACAGCATACCTCAAGAACTGAAGAAGTTTTGCCGAAGTAAACTAAAACCAGAAAGGAAAGCTTCAAAAGATATGAGTTGGGAGCCTGTTTCTTCTGGAAATCCAGCTGATGAGAAGATAAATCAGCTAAAACTGCTGATGAATCCCTTTGTTCATGTTCATGAAGGTAGTGTTCTTCAGAAGAAACTTCCTGGGTTGAAGGACTGTTTGCTGGTTCTGAAACCAGACAGTCTGCAGCAAGAAACTCTAGAGAGCATTGATGGTTCTCAAAATGTTTTGAACTTCGAACACAAGTTAGCCTTGGTCTCAGTGCATCCATCCCTTTTCCTGAAATGCTCTGTGTCAAAAAAGGAAGAATCTATTGTTGATAAGGGTAAGTTGGAAAGGCTTAGATTGGACCCTTATTTAGGGGTTAAAACCAAATTTCTGATCGAGTTTGTACGACTATGTTGTGCTGTTAATGAGAAAGTCCTCATTTTCAGCCAATTCATTGATACATTATCCTTAATTAAGGACCAACTTCAGTCAACCTTCAATTGGTCTGAGGGGAGCGAAGTGCTGTATATGTCTGGAAAGGTTGACCGAAAGCAAAAACAGTCTCTTATTCATATTTTCAATGATACAAATAGCCAAGCAAAGGTGTTGCTTGCTACTATAAAAACATCTTCAGAAGGAATTAACTTAATTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAAAAGAAGGTTGTTTTTACTTATCATCTTCTTGCACAGGGCACCCCTGAATGCACTAAATACTGTAAACAAGCAGAAAAGAACCGATTATCCGAACTTATTTTCTCAAGTGGAAATGCAGAACCTGATAAGCTCAAGAGTGGAGTAATTTTCGAGGATAAGGTTCTTGATCTCATGGTTCAGCATGAAAACTTGAAGGATATGTTTGCTGAATGCCGAGTTCAACCAAGGGAAAGCAATTTGGAAACTTTGGGCCTTTGA 1971 0.4013 MYVSLYPLCIIQVDAERSARRVSLGGGKNLQFDGAMFNESGGDSEAVWSHNDGTVWDLIPDTKETLYPHQQEGFEFIWENLAGTTDLAKLKRVDPQGEGGCIISHAPGTGKTRLTMVFLQSYLQLFPKCLPVIIAPSNILLSWEDELRKWNVGIPFHNLNSSELSGKEEDINVVDWSGNQRQKSDAIRMLKLCSWYNEKKSILLISYNLYEKLAGGKSEGDEEKEKKNRKIKNQKKRARSREPIDSAMGKVLREFPGLLVLDEGHTPRNHRSCIWKGLSESRSQKRIILSGTPFQNNFVELYNVLCLMKPSFPDSIPQELKKFCRSKLKPERKASKDMSWEPVSSGNPADEKINQLKLLMNPFVHVHEGSVLQKKLPGLKDCLLVLKPDSLQQETLESIDGSQNVLNFEHKLALVSVHPSLFLKCSVSKKEESIVDKGKLERLRLDPYLGVKTKFLIEFVRLCCAVNEKVLIFSQFIDTLSLIKDQLQSTFNWSEGSEVLYMSGKVDRKQKQSLIHIFNDTNSQAKVLLATIKTSSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVFTYHLLAQGTPECTKYCKQAEKNRLSELIFSSGNAEPDKLKSGVIFEDKVLDLMVQHENLKDMFAECRVQPRESNLETLGL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02874 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 615 IPR027417 -
Pste5g02874 656 Gene3D - 378 652 IPR027417 -
Pste5g02874 656 Pfam SNF2-related domain 80 397 IPR000330 GO:0005524|GO:0140658
Pste5g02874 656 SMART ultradead3 62 319 IPR014001 -
Pste5g02874 656 Coils Coil 217 241 - -
Pste5g02874 656 CDD SF2_C_SNF 449 581 - -
Pste5g02874 656 SMART helicmild6 485 570 IPR001650 -
Pste5g02874 656 Gene3D - 48 359 IPR038718 -
Pste5g02874 656 MobiDBLite consensus disorder prediction 218 243 - -
Pste5g02874 656 Pfam Helicase conserved C-terminal domain 464 570 IPR001650 -
Pste5g02874 656 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 616 IPR001650 -
Pste5g02874 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 330 IPR027417 -
Pste5g02874 656 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 29 650 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02874 Pste-Chr5 21422102 21424072 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02874 468 600 RAD5 or RAD16-like Gene Family AT5G43530 37.594 1.33e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste5g02874 SNF2_N 1.2e-18 CL0023