Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02872 CTACTTCCTCTTTCTCTCTCTCTCTCTCTCTCTCACTCACACACAGCACCTCCATCTTCTAAATTCTAATGGACAACCCACACCACCGTCAACTCACCCATCCTCCCATCATCAAAGAAATGGATTTCTTCTCATCAAATTCTTCTGCAACCCATCACAATAAAAATAACATCAACAACCAAAACAAAAACCATCATCAAACCATCACCGCCAATGGATCGCCCACACGCACCACTCATCATACTGTAAACACTGGCCTGAATTTAACGTGTGCTACTTCTGGACTCGCAAAAACACAAACCGGACAAAATTCTCAAGCTGAGTTAAGTGCTCTTGAAAGTCAATTGCGAAGACTGCAGGAAGAAAATCGCAAGTTGAGAACTGTGCTGGACCAGATTACTAAAAGCTATACCCAGCTACAAGCTCAGTTGTTCATCGCCTTGCAAAAACAAAAACTTCCTCAGATAATTGTGGAACAGAATACGGAAGGAAAAGGGATGGGGTCGGGACAAAAAAATGTGGAGCCCGCAGGAGCCTGCAGCAAATTAGAGATGGGGGTGAATGATGCATCAGTTTGTGATGAAAAGACTGATCAAGATGTATCGGTTTCTCGTTCAAACAACGCGGAGGTAATGTCAAAGACACATGATGAGCCTCAATTGACTAAACTGAATCTTGGAAAACAGGCTTGTCCTGAAGCTTCAGAAGATGTTCTTGATCGGTCCTCCTCACAGAGCTGGGGCTCTTCCAAACTAGAACAACAACCCAAAACTTCAGAACATGTTGCTGCTGCAGATGATCGGATTCCCCTCAGAAAAGCCAGGGTCTCTGTGCGTGCTAGATCAGAAGCTCCCTTGATTAGTGACGGATGTCAGTGGAGGAAATATGGACAAAAAATGGCTAAGGGTAACCCTTGCCCACGTGCTTACTATCGCTGCACCATGGCTGCAGGATGCCCAGTTCGCAAGCAGGTTCAAAGATGCGCGGAGGACAAAACGGTGTTGATAACAACGTACGAAGGCAATCACAACCACCCTCTGCCACCAGCTGCCACTGCCATGGCAAATACAACGTCGGCAGCAGCAGCAATGCTGATGTCAGGTTCAACACAAAGCAAGGAAGCACAAACAAACTGTGCAGGATATTACTCTTCAATTCCATATGCTTCCATGGCAACCCTATCAGCTTCAGCACCATTCCCAACCATAACTCTGGACTTGACTCAAAGCTCCAAAGCCATGCAGCTGCACAACCGCCATGCCGCCGCGTTCCCTCTGCCACTTGATGCATCTGGCGGTCCCCACCTTGTAGGGCATCCCTTGTTCTTCCCTCACAAGCTTCCGCATGCGCTGTTGCCCCTACTTCAACGACAACCTCCCTCTATGGTCGAAACGGTGAGTGCAGCCATTGCTTCGGATCCAAACTTCACTGCAGCTTTGGCAGCTGCGATCTCCTCCATCATTGGAGTACCGCGAGCTAGTGATGGTAACAGCAATCCAGATCCTATTCCATGCTCCCCGCAACTTCCTCAGTCATGCACTACTTTCTCCACCAACTAGCTATGGCCAAGGTTAATTTACTGTTTTTATCATTCATATGTAAAACGGATTAAGAGTTATTTAACTACCCCCGCTTCTCAATGCATCACTATATTATAAACAAGTCACTTGAACAACCTCACCCCTTCCACTTGCATGCTTCTGGATCTTTATGATAGTGCAACTTTGACGTCGTCGCTGGAACGCTGCAAGCTTTTCAACTATATATGTACAAATTAATTTTAGTCTTTGCTAGAATAGTTTTTTCATGTAACAACTTTTAGCAATTTTCTTCTTTAGTACGTAAAATATAAAAATTAATTTGTACCAGTCATATATCCTACAATAGCTAGGTATACATTGGTTTGTATTTTTAATTATTACCGTTAGTTAATTTACTGAT 1941 0.4467 MDNPHHRQLTHPPIIKEMDFFSSNSSATHHNKNNINNQNKNHHQTITANGSPTRTTHHTVNTGLNLTCATSGLAKTQTGQNSQAELSALESQLRRLQEENRKLRTVLDQITKSYTQLQAQLFIALQKQKLPQIIVEQNTEGKGMGSGQKNVEPAGACSKLEMGVNDASVCDEKTDQDVSVSRSNNAEVMSKTHDEPQLTKLNLGKQACPEASEDVLDRSSSQSWGSSKLEQQPKTSEHVAAADDRIPLRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPAATAMANTTSAAAAMLMSGSTQSKEAQTNCAGYYSSIPYASMATLSASAPFPTITLDLTQSSKAMQLHNRHAAAFPLPLDASGGPHLVGHPLFFPHKLPHALLPLLQRQPPSMVETVSAAIASDPNFTAALAAAISSIIGVPRASDGNSNPDPIPCSPQLPQSCTTFSTN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02872 496 Gene3D WRKY domain 249 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste5g02872 496 Coils Coil 79 120 - -
Pste5g02872 496 SUPERFAMILY WRKY DNA-binding domain 257 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste5g02872 496 MobiDBLite consensus disorder prediction 209 240 - -
Pste5g02872 496 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g02872 496 Pfam WRKY DNA -binding domain 266 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g02872 496 MobiDBLite consensus disorder prediction 173 195 - -
Pste5g02872 496 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 75 471 IPR044810 GO:0003700
Pste5g02872 496 MobiDBLite consensus disorder prediction 470 496 - -
Pste5g02872 496 FunFam probable WRKY transcription factor 31 249 326 - -
Pste5g02872 496 MobiDBLite consensus disorder prediction 215 234 - -
Pste5g02872 496 MobiDBLite consensus disorder prediction 24 43 - -
Pste5g02872 496 MobiDBLite consensus disorder prediction 179 195 - -
Pste5g02872 496 SMART WRKY_cls 264 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02872 Pste-Chr5 21394989 21399627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02872 11 496 WRKY Transcription Factor Family AT4G01720 41.556 2.09e-87 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste5g02872 WRKY 2.4e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02872 5 21394989 21399627 Pste4g01419 4 10622702 10626714 PCT