Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02851 ATGCGTTGCATCAATAGATTGTTGCTGCGGACGTCATGTTCCAACCCTCGCAATATGTGTACGATTACGTCCATAAAGCTGAACTACATGATCGAGACTTGCATTCAAGACAATAACATACAGCATGCTCGTAAACTGTTTGACGGAAACCCGTCTTCCCGCAACCTTGTTTCCTGGAACATGATGATGACTGCCTATGTTAAAAATCATCAAATTGAATATGCCCGCAGCCTGTTTGATCAAATGCCCCTCAGAGACACGGTTTCCTGGAATATCATGCTCTCTGGTTTTCGCAAAACCACAAACTTTGATGGATCGTACCACTGTTTCTTGCAAATGGGAAGAGCTGGTGTGGCTCCCGATGACCATACCATCTCCACATTAATCCGGGCAGTTATAGGTACTGAGTTGGATGTTTTGGTCCCTCAGGTTCATGCCCAAGCACTGCATTTGGCACTTAACTTGAGTGTGTTTGTTGGGTCTTCATTGATCAGAGCTTATGCGAGTTTAAGACAGGAGGAGGCTTTTAAGCGAGTTTTTTATGATATATTGATGAAAGATGTCACATCTTGGAACTCCTTGGTTTCTGGTTATATGGAATTGGGAAGTATAGATGATGCTCAAACAACCTTTGATATGATGCCCCAGAGAAACATAATTTCCTGGACTACTTTGGTGAATGGCTATATTAGGAACAAGAAGATAAACAAAGCAAGGTCTGTTTTTAACAAAATGATTGAAAGGAATGTTGTGTCATGGACGGTAATGATTAGTGGGTATGTGCAAAATAACAGATTTATGGATGCATTGAAGCTCTTTCTTCTGATGTTTAAGTCAGGAACTCGTCCCAATCATTTCACAGCAGGGCAATTTGACGAAGCAGTAAAATTGATCAAGAATTTGCCATTTGAGCCTGACCTGGTTTTGTGGGGTGCATTGCTTGCAGCTTGTGGCTTGCATTCAAATTTAGAACTTGGAGAGTATGCTGCAGAGAGGATCCGCAAACTGGAGAGCAATCATCCTGTTTCTTACTCAATTCTTTCAAAGATCCAAGGTGAAAAAGGAATATGGACCAGCGTAAATGAATTGAGGGACATGATGAAGGAGAGACAAGTCAAAAAGCAGAAGGCAATGAGTAAGCTCTTTCTGTAA 1152 0.4158 MRCINRLLLRTSCSNPRNMCTITSIKLNYMIETCIQDNNIQHARKLFDGNPSSRNLVSWNMMMTAYVKNHQIEYARSLFDQMPLRDTVSWNIMLSGFRKTTNFDGSYHCFLQMGRAGVAPDDHTISTLIRAVIGTELDVLVPQVHAQALHLALNLSVFVGSSLIRAYASLRQEEAFKRVFYDILMKDVTSWNSLVSGYMELGSIDDAQTTFDMMPQRNIISWTTLVNGYIRNKKINKARSVFNKMIERNVVSWTVMISGYVQNNRFMDALKLFLLMFKSGTRPNHFTAGQFDEAVKLIKNLPFEPDLVLWGALLAACGLHSNLELGEYAAERIRKLESNHPVSYSILSKIQGEKGIWTSVNELRDMMKERQVKKQKAMSKLFL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02851 383 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 73 IPR046960 GO:0003723|GO:0009451
Pste5g02851 383 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 55 85 IPR002885 -
Pste5g02851 383 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Pste5g02851 383 SUPERFAMILY TPR-like 156 344 IPR011990 GO:0005515
Pste5g02851 383 Gene3D Tetratricopeptide repeat domain 12 139 IPR011990 GO:0005515
Pste5g02851 383 Gene3D Tetratricopeptide repeat domain 289 382 IPR011990 GO:0005515
Pste5g02851 383 Gene3D Tetratricopeptide repeat domain 218 288 IPR011990 GO:0005515
Pste5g02851 383 Gene3D Tetratricopeptide repeat domain 143 217 IPR011990 GO:0005515
Pste5g02851 383 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Pste5g02851 383 Pfam PPR repeat 190 219 IPR002885 -
Pste5g02851 383 Pfam PPR repeat 57 83 IPR002885 -
Pste5g02851 383 Pfam E motif 320 375 IPR046848 -
Pste5g02851 383 NCBIfam pentatricopeptide repeat 57 83 IPR002885 -
Pste5g02851 383 NCBIfam pentatricopeptide repeat 88 121 IPR002885 -
Pste5g02851 383 NCBIfam pentatricopeptide repeat 251 284 IPR002885 -
Pste5g02851 383 NCBIfam pentatricopeptide repeat 220 251 IPR002885 -
Pste5g02851 383 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Pste5g02851 383 Pfam PPR repeat family 248 287 IPR002885 -
Pste5g02851 383 Pfam PPR repeat family 86 131 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02851 Pste-Chr5 21205246 21206838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02851 30 379 Glycoside Hydrolase AT3G49170 26.601 5.15e-34 132