LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g02834	TTCAATTCCATTCATTATAGTCAAAATCTTGGACTGCTTTATCCTACGCCTCCTCGCTGCTTATCCTGCGCATATTTCGCCTGATTCTCGCCGAGATCTTCACCTACCTCCTCGCCGCTCTCACTTTCTCAACTACACCATATTCATATTTGATTTCAGAAAGAATCATGAGTTGTTTCAGCTGTTGTGAAGAAGAAGACTTCCAGAAGACTGCTGAAAGCGGAGGACAGCATTTGGTAAAAAACTCAGCAGTAAATGATGGAAATGGTCGTGCATCTGAAACTACAAGACAGGGCACTCAGGCTGTTAAAATTCAGCCCATTGAAGTTCCTGAATTACCAGTAGATGAACTCAAAGATATTACAGATAGTTTTGGAGAAAGTTCTTTGATTGGAGAGGGATCTTATGGAAGAGTATATTATGGTGTGCTGAAAAGTGGGCAGGCTGCGGCAATCAAGAAATTAGATGCCAGTAAACAGCCTGATGAGGAATTTTTGGCCCAGGTATTCGTCAACATATGTTTATCGCTAGTCATTAAGGTTTCAATGGTTTCACGGCTGAAGCATGACAATTTTGTTCAATTGCTTGGCTATTGCATTGATGGAAACTCCCGAGTTCTTGCTTATGAATTTGCCTCTAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTAACATGGACTCAGAGAGTTAAAATTGCTGTAGGGGCTGCAAAAGGGCTTGAGTACTTGCACGAGCGAGCTGATCCCCACATTATCCACCGGGACATCAAATCAAGCAATGTACTAATCTTTGATGATGATGTTGCTAAAATTGCTGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCAGCACGTCTCCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGTCAATTGAATGCTAAGAGTGATGTATACAGCTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAGCCTGTTGATCATACACTACCCCGTGGGCAGCAGAGCTTGGTCACTTGGGCTACACCAAGACTCAGTGAGGATAAAGTCCGACAGTGTGTAGATGGAAGACTAGGAGGAGAGTACCCGCCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCCCTGTGCGTGCAGTATGAAGCTGATTTCAGACCAAACATGAGCATAGTAGTCAAAGCGCTTCAACCTTTGTTGACTGCAAGACACGGGCCTGCTGGTGAAACTCCAAACTAACCTGTCTATATTTCTGTCTATCTGTATCAATGAGTATGTGCACGCGAGATATAAGAAAGTGACTGCTTCAGAAGCGGATGGAAAATTGCTTGAACTACATGTTTATATATCCAATTGTTTATACTGCATTCATTTTGTTCATAATGCATAGGTTCTCTGCGATTTACTTGCTTCTTTTATTTTTCTTTATTGTTATTGTTTGCTCTATTTTCCTTGTTTCTCTGTTCCTTCTACTGGGATTACTGTCATCTTATGTGAAATTTTTAGAAAAAAAAACAACAAATGAGAATGGTATCATATTC	1591	0.4167	MSCFSCCEEEDFQKTAESGGQHLVKNSAVNDGNGRASETTRQGTQAVKIQPIEVPELPVDELKDITDSFGESSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDEEFLAQVFVNICLSLVIKVSMVSRLKHDNFVQLLGYCIDGNSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLTWTQRVKIAVGAAKGLEYLHERADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDGRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARHGPAGETPN	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g02834	373	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	207	219	IPR008271	GO:0004672\|GO:0006468
	Pste5g02834	373	SMART	serkin_6	69	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g02834	373	MobiDBLite	consensus disorder prediction	19	42	-	-
	Pste5g02834	373	Pfam	Protein tyrosine and serine/threonine kinase	74	357	IPR001245	GO:0004672\|GO:0006468
	Pste5g02834	373	MobiDBLite	consensus disorder prediction	17	42	-	-
	Pste5g02834	373	PANTHER	PTO-INTERACTING PROTEIN 1-LIKE	4	364	-	-
	Pste5g02834	373	SUPERFAMILY	Protein kinase-like (PK-like)	46	357	IPR011009	-
	Pste5g02834	373	ProSitePatterns	Protein kinases ATP-binding region signature.	75	98	IPR017441	GO:0005524
	Pste5g02834	373	Gene3D	Transferase(Phosphotransferase) domain 1	156	366	-	-
	Pste5g02834	373	PIRSF	ILK	9	365	-	-
	Pste5g02834	373	FunFam	pto-interacting protein 1	157	368	-	-
	Pste5g02834	373	Gene3D	Phosphorylase Kinase; domain 1	29	155	-	-
	Pste5g02834	373	ProSiteProfiles	Protein kinase domain profile.	69	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g02834	Pste-Chr5	21070877	21074816	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g02834	61	364	Receptor kinase-like Gene Family	AT3G58690	48.693	5.88e-87	266

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIII	Pste5g02834		PK_Tyr_Ser-Thr	1.5e-41	CL0016