Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02818 ATGATTCCGAATAAATTTGTGGAGAAATATGGAGAACACTTATCAAATACTCTATTTCTTAAGACTCCAAACGGTGCTCAGTGGAAATTAAATTTGGAAAAGCGTGATGGTAAAATATGGTTTGAAAATGGTTGGAAAGAATTTGTAGAGTTTCACTCTCTAGCTCATGGATATGTTTTGGTTTTTAGATGTGAAAGAACATCCCATTTTGGGGTAGACATATTTGATTTTAGTGGCTTAGAGATAAATTATCCTGCTGAAGTAATAGAAGGTAAAAGGCCTTCTAAGAATCAAGGAAATAAACCTCCAAACGATAAAAAACTAGAGAATCACAAATTAGGTCTAAAGAGAAAAGACAACTGCTCTATGGAAATTTTTCAACCATATCAATTGAGAAATCATAAGTGTGTTAAAATCCAGAGTAAATTGAATTTGTCAAAGGAGACTTTGCATCCTACTATCAGCAAGTGTAAAGCAAACTCTTTCAAGCCTAGTAATCCATTCTTCTTGGTTGTCATTCGTCGTTCATATCTCACTTCCCGTCTTCTGAATCTACCGTGTACGTTTTGGATGAGACACTTTGATTTGCAAAGGCAAGAGAGACTTGTCTATCTTCGGGTGATAAATGGTAGAGTTTGGCCTGTAAAGTTTCTCATCAATAAAGACAGGACCAAAAAAAAAGTTAGATTCTCAAGTGGATGGGTTGAATTTAGCCAAAACAACAACTTGAAAGTAGATGATGTTTGCACCTTTGAGCTCATTGATAATACTAAAAATTTAGTCAAAAGAGAGAAGCTTATCATGGCTAGAGAAAAGAAAGAAAAA 825 0.3442 MIPNKFVEKYGEHLSNTLFLKTPNGAQWKLNLEKRDGKIWFENGWKEFVEFHSLAHGYVLVFRCERTSHFGVDIFDFSGLEINYPAEVIEGKRPSKNQGNKPPNDKKLENHKLGLKRKDNCSMEIFQPYQLRNHKCVKIQSKLNLSKETLHPTISKCKANSFKPSNPFFLVVIRRSYLTSRLLNLPCTFWMRHFDLQRQERLVYLRVINGRVWPVKFLINKDRTKKKVRFSSGWVEFSQNNNLKVDDVCTFELIDNTKNLVKREKLIMAREKKEK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02818 275 PANTHER B3 DOMAIN-CONTAINING 1 258 - -
Pste5g02818 275 SUPERFAMILY DNA-binding pseudobarrel domain 1 85 IPR015300 -
Pste5g02818 275 CDD B3_DNA 168 261 IPR003340 GO:0003677
Pste5g02818 275 Gene3D - 1 79 IPR015300 -
Pste5g02818 275 MobiDBLite consensus disorder prediction 91 110 - -
Pste5g02818 275 Pfam B3 DNA binding domain 168 259 IPR003340 GO:0003677
Pste5g02818 275 Pfam B3 DNA binding domain 1 75 IPR003340 GO:0003677
Pste5g02818 275 SMART B3_2 169 264 IPR003340 GO:0003677
Pste5g02818 275 SMART B3_2 1 78 IPR003340 GO:0003677
Pste5g02818 275 Gene3D - 153 264 IPR015300 -
Pste5g02818 275 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Pste5g02818 275 ProSiteProfiles B3 DNA-binding domain profile. 168 274 IPR003340 GO:0003677
Pste5g02818 275 SUPERFAMILY DNA-binding pseudobarrel domain 162 261 IPR015300 -
Pste5g02818 275 CDD B3_DNA 1 76 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02818 Pste-Chr5 20887313 20888727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02818 2 84 B3 DNA Binding Superfamily AT3G18990 48.193 8.22e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste5g02818 B3 1.6e-14 CL0405