Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02808 AATCTGCAAAAATAGGAGGAATGAATGCTAAGGTGAAGAAAGGAGGGTCCATAGAACAGGTGGGGCAGAGTGAAGAAGAGATAAAAAAAGGAGCATGGAGCCTTGAAGAGGACACTATTCTCCAAAATTACGTGGCCACCCACGGCCATGATGAAATGAAAATTGCAGGGCTGAAGAGATCGGGGAAAAGTTGCAGGCTAAGATGGCTAAACTACTTGCGTCCCGATGTACGTCGCGGAAATATAACAGTGGAAGAACAGATAACGATTCTTGAACTCCACTCTCGGTGGGGTAACAGGTGGTCGAAAATTGCTCGGCATCTCCCAGGTAGAACGGACAACGAAATAAAGAATTATTGGAGAACTCGAGTGATTAAGCAAGCAAGGAATCTAAAGTGTGACGTGGAAAGTAAACACTTTCAAGATGCCTTGCGTTACGTGTGGATGCCCCGTTTGGTGGAGCGGATTCAGCCTCCACCAGCCCCCACGCAGCTTCACCCAAAACCAACCACTCATCAACAACACGGGTTAGGGTTAGGGTTAGGGTTACACCATTCGGATCCGGGTTCCACCCCCATGCCTCCTGTACCATGCCACACTTTGACTTTTCATGACCACAATTTTCAACAGGGGAATACCATCTTACCTTTATCTGCTGGGGACTTTAACTTGATCGAGACTTTGTGGGATGATCACAGTATGTGGCTTATGCAACAGCTTTCTCATGATCTGGAAATTAAAGACAATTTCCTTGCG 755 0.4662 MNAKVKKGGSIEQVGQSEEEIKKGAWSLEEDTILQNYVATHGHDEMKIAGLKRSGKSCRLRWLNYLRPDVRRGNITVEEQITILELHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQARNLKCDVESKHFQDALRYVWMPRLVERIQPPPAPTQLHPKPTTHQQHGLGLGLGLHHSDPGSTPMPPVPCHTLTFHDHNFQQGNTILPLSAGDFNLIETLWDDHSMWLMQQLSHDLEIKDNFLA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02808 245 Gene3D - 76 117 - -
Pste5g02808 245 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 161 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pste5g02808 245 CDD SANT 25 66 IPR001005 -
Pste5g02808 245 FunFam MYB transcription factor 76 139 - -
Pste5g02808 245 Gene3D - 14 72 - -
Pste5g02808 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Pste5g02808 245 Pfam Myb-like DNA-binding domain 23 66 IPR001005 -
Pste5g02808 245 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Pste5g02808 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 66 IPR017930 -
Pste5g02808 245 MobiDBLite consensus disorder prediction 151 174 - -
Pste5g02808 245 CDD SANT 76 115 IPR001005 -
Pste5g02808 245 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Pste5g02808 245 SMART sant 71 119 IPR001005 -
Pste5g02808 245 SMART sant 22 68 IPR001005 -
Pste5g02808 245 SUPERFAMILY Homeodomain-like 21 113 IPR009057 -
Pste5g02808 245 ProSiteProfiles Myb-like domain profile. 18 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02808 Pste-Chr5 20662871 20663817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02808 16 156 MYB Transcription Factor Family AT2G47190 64.828 1.06e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g02808 Myb_DNA-binding 1.5e-13 CL0123