LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g02807	ATGGCTATGGTGGCCATGACCAGTTACGTAGTTGTTTGTGATATGGAGAACGGAAGTAGTGAAGAGGAGATGACAATAACCAAAGGCCCATGGACAGAGGAAGAGGATTCTCTTCTCTACAATTACATCACTCTCCACGGCCAAGGTCACTGGAACTCTGTCGCTAGCTACACTGGTCTAAAACGAACCGGCAAAAGCTGCAGATTACGATGGTTGAATTACTTGCGTCCAAACGTTCGACGCGGGAACATAAGCCTCCAAGAACAGCTCTTGATTCTTCATCTTCATTCTCGTTGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTACCAGGAAGAACAGACAACGAGATTAAGAACTATTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTGAAATGTGATGTGAACAGCAAGCAATTCAGAGATACGTTGCGTTTTGTGTGGATACCACGTATGGTGGAGAGAATCCAGGCTCAAGCCTCATCATCATCATCATCATCATCATCAGGGGAAGGGGAACCCCAAACCAACGCACACTCTTGTGGATCATCAACGCTTCATGTCAACCCACCTTCTGTGTCCGACTCTTACAACTTACCGGGTGCTGCAACTGCAGAACAAGTTAACAATAACAATAACAGTAACAGTAACAGTAGCACCCTATTGACAGAGACAGACTATAGCTACACGGACATAGCAGCCGCGGATTTCTGGACCCATGAGAATATTTCCTTTCTGCAACAGCAGCTTGCTGATGAACTCTGATTCCATTCTTTTAACGTCTCCTCATAATTCATCAATTCAAACACTCCCCACACATGTCACGTGTTTCTTTCTATTCATTCAACTCACCTCTAATTTATTTTCAATCATCAACCTATACTTTAAACAATTTCAGGACACCTGTATTTGTTTTACACAACTGTGAGACACTTGAACGTCATTTTTATCAGACAAAACTTTGGCCATCAACGTAATACAAATACAGTCTATGTAGACTCTCTTTTGTATCCGGTAAGGCCTATTTTTTTGTTGAGAGTTGCTAATACTGG	1058	0.4291	MAMVAMTSYVVVCDMENGSSEEEMTITKGPWTEEEDSLLYNYITLHGQGHWNSVASYTGLKRTGKSCRLRWLNYLRPNVRRGNISLQEQLLILHLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWIPRMVERIQAQASSSSSSSSSGEGEPQTNAHSCGSSTLHVNPPSVSDSYNLPGAATAEQVNNNNNSNSNSSTLLTETDYSYTDIAAADFWTHENISFLQQQLADEL	256

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g02807	256	ProSiteProfiles	Myb-like domain profile.	76	126	IPR001005	-
	Pste5g02807	256	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	23	217	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g02807	256	MobiDBLite	consensus disorder prediction	161	201	-	-
	Pste5g02807	256	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	80	130	IPR017930	-
	Pste5g02807	256	FunFam	Myb transcription factor	28	80	-	-
	Pste5g02807	256	SMART	sant	80	128	IPR001005	-
	Pste5g02807	256	SMART	sant	27	77	IPR001005	-
	Pste5g02807	256	CDD	SANT	85	124	IPR001005	-
	Pste5g02807	256	Gene3D	-	85	126	-	-
	Pste5g02807	256	ProSiteProfiles	Myb-like domain profile.	23	75	IPR001005	-
	Pste5g02807	256	CDD	SANT	30	75	IPR001005	-
	Pste5g02807	256	Pfam	Myb-like DNA-binding domain	28	75	IPR001005	-
	Pste5g02807	256	Pfam	Myb-like DNA-binding domain	81	124	IPR001005	-
	Pste5g02807	256	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	23	79	IPR017930	-
	Pste5g02807	256	FunFam	MYB transcription factor	85	148	-	-
	Pste5g02807	256	Gene3D	-	27	80	-	-
	Pste5g02807	256	SUPERFAMILY	Homeodomain-like	26	122	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g02807	Pste-Chr5	20646229	20649475	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g02807	21	162	MYB Transcription Factor Family	AT2G47190	70.423	1.44e-76	231

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste5g02807		Myb_DNA-binding	1.7e-16	CL0123