Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02798 AAATAAATGAGGTTTTTGAAAACATTAATGAGCATTTTGTTATAAAAACCTTTTTCTATTTAATTATTTTTCAAAAAATGCTAAACCCCGTGGACACTGCAAATTTGCTTGGGAAGCATAGCAAAGCACAACAGAGAAAGCAGAGGCCAGTTCAGTGTTCCTTCTTCAGTTTCTCTAACCATTTTTCCATTCTAGGGCACACAATAGCGCGAATTGAGAATCAAGTGGACGGTTTCTGTCATGTAAAAGTTTATGTTGCACCTGTTCCGAGAACGGCCACTGAGGCTGAGATTCGCCCTGTATTTGAAGAACATGGAACTATTGTTGAGGTTGTCCTTTTAAAAGATAAGAGAACTGGTGCACGTCAAGGAAGTTGTTTTGTGAAATATGCAACATTTGATGAAGCTGACAGAGCTATTAAGGCTTTAAACAATCAATATACTTTTGCTGGGGAATCATCTCCTGTTGTTGTCAAATTTGCCGATCGAGAACTTGAGCGCCTTGAGGTGGCAGATAAAGTTTTTGTTAGTTACATCAACAGAGAAGCTACAAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGGCATGTAGAAGATGTCTTCATCTCAAACACTCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAAAACCTTCACGATGAGAGGTTGTGATCATCCTTTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAAGACCGGAGAATCAAGGCCACTTCCAAATTTTGGTGATTCCAATAGTGGAGGAAGTATTCTGCCTATTGCCCCTTATCGTTCTACAATTGCACACCCACAAGTTACTTCTCATATGCAAAACTGGGAACCTGGTGCTACTATGGTACAACAGCCATTTCCTCCCCAACAAGTGCATTCACAATTGGCTTTAATGCCTTTGGGGTCTATTCAAGCTCCAAAGTTGTCTTCTCAGCCATTTATTACTGAGTTGCAGAGACAATTGCATCCAGCAGATTCATCAGTTCAAAATATAGAGCAGCAGCTTATTTCACAGCTGCCTACTCAGACTGGAAGCAACCCTAGTACAGTTACTGGCAATACTCCACCTGATATGCCTACGAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTTATAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGAGTAATGTTTCAACTGTTTGATCTTGTTCATAGAATCTGTTTTGGATTTCTGTTACTTTGTTGTGTGATGTGGGAGAAGCCTGAGGAGTATGCCTTGTATGAGAAAGAATCTCAGAAGCAGCAGGAGCAGGAGGATAATAGCTGTAATCTCTCACAATTGTCATTATCTTCCTCTCAGCAGGTTACTCAAAGACAACAGGAAACAAATCTTGACCACAGGCAGTCAGAAACAAGTCCTGTTGTTGGATAGGTGTGATGTTATTTTTCTTTGGTGACTGAAATCACTCATCGTTCACAATTATTATCATGATAAAGTGACCTTCAAATTGCTTCAAAACTAGCCTAATGTTTCGTTATGAGGTTTTGTTTCTTACTGCTTCATTTATTTATTACAATGACTATAACTAATCTGTAAATGGGAAATTTGTTAATTTCCTAACCGCTCAGTATAAAGTGCGTCTGAAAAGTATATAATCTAGGTAAGTACTTCTATGTAGATATCTGGATTATCAAATGGTTTAACTGTTGTCATAGTCAAGTAGGTTGAGCTCTTAACTTTTGGGAGCTAGGAAAATCTGACGATTGTAAAACTTACTCACAGAGTGAGTCATTCAGAG 1845 0.3881 MLNPVDTANLLGKHSKAQQRKQRPVQCSFFSFSNHFSILGHTIARIENQVDGFCHVKVYVAPVPRTATEAEIRPVFEEHGTIVEVVLLKDKRTGARQGSCFVKYATFDEADRAIKALNNQYTFAGESSPVVVKFADRELERLEVADKVFVSYINREATKKEIEEIFSPYGHVEDVFISNTRGYAFVKFSNREMALAAIKGLNKTFTMRGCDHPLIVRFADPKKPKTGESRPLPNFGDSNSGGSILPIAPYRSTIAHPQVTSHMQNWEPGATMVQQPFPPQQVHSQLALMPLGSIQAPKLSSQPFITELQRQLHPADSSVQNIEQQLISQLPTQTGSNPSTVTGNTPPDMPTSPQDEDFPECDWSEHYCPDGYKYYYNCVTCESRVMFQLFDLVHRICFGFLLLCCVMWEKPEEYALYEKESQKQQEQEDNSCNLSQLSLSSSQQVTQRQQETNLDHRQSETSPVVG 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02798 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 206 IPR000504 GO:0003723
Pste5g02798 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 123 IPR000504 GO:0003723
Pste5g02798 466 PANTHER RNA BINDING PROTEIN 15 325 - -
Pste5g02798 466 CDD WW 361 413 IPR001202 GO:0005515
Pste5g02798 466 MobiDBLite consensus disorder prediction 220 240 - -
Pste5g02798 466 SUPERFAMILY WW domain 362 383 IPR036020 GO:0005515
Pste5g02798 466 Gene3D - 359 385 - -
Pste5g02798 466 SUPERFAMILY RNA-binding domain, RBD 147 243 IPR035979 GO:0003676
Pste5g02798 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 221 IPR000504 GO:0003723
Pste5g02798 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 137 IPR000504 GO:0003723
Pste5g02798 466 MobiDBLite consensus disorder prediction 330 359 - -
Pste5g02798 466 SMART rrm1_1 57 133 IPR000504 GO:0003723
Pste5g02798 466 SMART rrm1_1 147 217 IPR000504 GO:0003723
Pste5g02798 466 MobiDBLite consensus disorder prediction 427 466 - -
Pste5g02798 466 Gene3D - 54 142 IPR012677 -
Pste5g02798 466 MobiDBLite consensus disorder prediction 421 466 - -
Pste5g02798 466 Gene3D - 143 228 IPR012677 -
Pste5g02798 466 SUPERFAMILY RNA-binding domain, RBD 50 139 IPR035979 GO:0003676
Pste5g02798 466 MobiDBLite consensus disorder prediction 330 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02798 Pste-Chr5 20525045 20534833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02798 58 315 Eukaryotic Initiation Factors Gene Family AT1G71770 24.549 2.09e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02798 5 20525045 20534833 Pste5g02798 5 20525045 20534833 ECH