Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02792 CCACGGTGGTGCATAGAATCACGGGTGGCGACGTTCCACAAGCGAAAGCGCCAAATCACAATAATACCCACACCTTACTCCTTCCTCTTCTCGCAATACCTAAATTGAATTCCGTTATTCCAGTTTTCCTCAACCACCTTCAAGCTTCAGCTAGGGTTTCTTCTTGCTCTTTTCCCCCCATGTCGAAGAGGAAGTTCGGATTCGAAGGGTTTGGCATAAACCGCCAATCCACCTACAGCTTCGAACGATCCCAGGCCCCTCAGCGACTCTACGTCCCTCCCTCCGCGCGCCACGGCCACGACAACTACGAGGACACCGACCTCGACAACATCGACTACGACGACAACAACAACGACGACGCCAACAAAAACAACAACGCCGCCGGAAACAACGACGACGACGGCGAAATTGACCCCCTCGACGCATTCATGGAGGGCATTCACGAAGAGATGCGGGCGCCGCCGCCGCCGAAGCCGAAGGAGAAGGCGGAGGACCGGTACAAGGACGACGAGGACGACGATCCGATGGAGAGCTTTCTGAAGGCTAAGAAGGATTTAGGGTTGACTCTTGCGTCGGAGGCGCTCCACGCTGGGTATGATTCCGATGAGGAGGTTTATGCTGCTGCGAAAGCTGTTGATGCTGGTATGATTGAGTATGATTCTGACGATAACCCTATTGTTGTTGACAAGAAGAAAATTGAGCCCATTCCTTCTCTCGATCACTCTTCCATTGACTACGAGCCCTTCAATAAGGATTTTTATGAGGAGACACCTTCAATATCAGGTATGAGTGAGCAGGATGTAAGTGAATATCGGAAGAATTTGGCTATTCGTGTATCAGGTTTTGATGTTCCTAAGCCAATAAAGGCATTTGAGGACTGTGGGTTTCCTTCACAGATTATGAATGCTATAAAAAAACAAGGGTATGAGAAGCCGACATCTATACAATGTCAGGCTTTTCCAGTTGTTCTTTCTGGCAGGGATATCATTGGTATAGCAAAAACTGGTTCAGGTAAAACTGCTTCATTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAGGAGGGGCCTATAGGGGTGATATGTGCACCAACCAGAGAGTTGGCACATCAGATATATCTTGAGGCCAAGAAATTTGCAAAAGCTTATGGGATACGTGTGTCTGCTGTCTATGGTGGAATGTCAAAACTGGAACAATTCAAAGAACTCAAGGCAGGGTGTGAGATAGTTGTTGCTACCCCTGGAAGATTGATAGACATGCTGAAAATGAAGGCATTGGCCATGATGAGAGCAACATACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGGTTTGAGCCACAAGTAAGGTCCATTGTTGGTCAAATTAGGCCAGACCGCCAAACTTTACTATTCTCTGCAACAATGCCTCGGAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTATTAGAGTAATTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCATCAGATACAGAGAAATTGCCTTGGCTCTTGGAAAAGCTGCCTGAAATGATTGATCAAGGTGATACCCTAGTTTTTGCTTCGAAAAAGGCTACTGTGGATGAAATTGAATCACAATTAGCTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGTCTTTACCATGTGCTCATTGCAACTGATGTTGCTGCCCGTGGTCTTGACATCAAATCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGTGCTGGCGATAAGGATGGGGTTGCATACACTCTTATAACTCATAAAGAAGCACGGTTTGCTGGGGAATTGGTCAATAGCTTAGTTGCGGCTGGTCAAAATGTGTCTGTGGAGCTTATGGATCTTGCCATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAAGGAGGCGGAAAAAAAGGCAGAGGTAGAGGTGGGGGTGGGGGTGGCAGAGGCGTGCGAGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCTGAGTCAAACAGCACACCATCTAACGCAGTTCCTAGTCGATCTGCTGCCGTAAATTCTCTGCGAACCGGAATGATGTCACAATTTAAGAGTAATTTTGTTGCTGCTTCATCAAACTCTCAAAATCAAGGATTCGGTAACAATACAAGCATGACTGCTAATAAGAGACCAGCACTTCCTGGTTTTGTATCTGGTGGATCAATTGGTGGTGACATAAATACCTATCAACATACTGCTTCCCCCAATTCTGCGGTAAATTCCACCAGTCAAGCTTCTGGCGTAAATCCTAGTCAGAAGAGCGCGAACAGTTCTAAACCTAGAGAAAGGCGGAGGCCTTCAGGTTGGGATAGATAGTTGTCACATTGAATGACACCACTGTTAAATGTATCCATGTTCCTCTCTTCAGGTCAAGCCAAGAATTGTTTTTCTTTGTATAATTAATGTTCCAGTTTTCAATCACCCATAATATTATTTTAGCTTCCAACTTGTAGTAGAAAGGTTTGTGTGGTTCTATTTTTGCTTATGAAAGGGGTATTGCGCAACGAAAAGAACAAAGAACAATTATGCCTCTCTTATCCTAC 2719 0.452 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSARHGHDNYEDTDLDNIDYDDNNNDDANKNNNAAGNNDDDGEIDPLDAFMEGIHEEMRAPPPPKPKEKAEDRYKDDEDDDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVVDKKKIEPIPSLDHSSIDYEPFNKDFYEETPSISGMSEQDVSEYRKNLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQGYEKPTSIQCQAFPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALAMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVIVGEVGMANEDITQVVHVIPSDTEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITHKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNSTPSNAVPSRSAAVNSLRTGMMSQFKSNFVAASSNSQNQGFGNNTSMTANKRPALPGFVSGGSIGGDINTYQHTASPNSAVNSTSQASGVNPSQKSANSSKPRERRRPSGWDR 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02792 770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 609 IPR001650 -
Pste5g02792 770 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Pste5g02792 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 604 IPR027417 -
Pste5g02792 770 Gene3D - 192 436 IPR027417 -
Pste5g02792 770 Pfam Helicase conserved C-terminal domain 464 569 IPR001650 -
Pste5g02792 770 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Pste5g02792 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 438 IPR027417 -
Pste5g02792 770 SMART helicmild6 488 569 IPR001650 -
Pste5g02792 770 MobiDBLite consensus disorder prediction 81 114 - -
Pste5g02792 770 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 186 609 - -
Pste5g02792 770 FunFam probable ATP-dependent RNA helicase DDX17 191 438 - -
Pste5g02792 770 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Pste5g02792 770 MobiDBLite consensus disorder prediction 722 755 - -
Pste5g02792 770 CDD DEADc_DDX42 240 435 - -
Pste5g02792 770 SMART ultradead3 248 450 IPR014001 -
Pste5g02792 770 Gene3D - 437 613 IPR027417 -
Pste5g02792 770 MobiDBLite consensus disorder prediction 616 641 - -
Pste5g02792 770 CDD SF2_C_DEAD 447 579 - -
Pste5g02792 770 MobiDBLite consensus disorder prediction 1 114 - -
Pste5g02792 770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Pste5g02792 770 MobiDBLite consensus disorder prediction 756 770 - -
Pste5g02792 770 MobiDBLite consensus disorder prediction 715 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02792 Pste-Chr5 20350023 20354321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02792 226 579 Eukaryotic Initiation Factors Gene Family AT3G19760 32.773 1.51e-62 214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02792 5 20350023 20354321 Pste5g02792 5 20350023 20354321 ECH