Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02775 TTTACGTAGTTTGCATAGCTTTTTTTACGAAATGAATTATTCAACTAATTTATGTATCCATTTACTATTGATTGATTCTATAAAGTAAGTAGCTTGGCATGTAAAGGAGGAGCACCGAACAAGTCTAATGATGGGGCCTGGGATTTCAAATTTCAGTTTGTTTTGAACGTTTGTTACCGTTGCTGAAGGATCATAGGTCCCAGATTTAAACCTGGAAAGGGCAATTTTCAAACTGTAGGTGGAGGGTCATTTGGAAAAAAGTATCTGAGTCTCATAAATTTCTTGTTCCATAGATGCAATAATTTGCAATCGTGCCCCCTTCCCTCCCAACCAATAAAAAGATGCACAGGATGTTTCAGATTCCTGAGAAAGGGAGAGCAGAGAAAGGAAAAGGAAAACAGAGTACGCCACAGAATTTGAAAACAAAGGCTGAAATTTCAAGACAGAGATCATTGGGTGTGATATATATGGAAGAGATTGTTTTGTTTGTCGATGATTTGAAATTACTTTCTGGAATTCCTCGTTGTAGAATTTGTCATGAAGAAGAGTTTGAAAGCTCAGAAACCTTGGAAGCACCTTGTGCCTGTTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAACACAACCTGTGAAATATGTCTCCAGGTATGA 680 0.3824 MHRMFQIPEKGRAEKGKGKQSTPQNLKTKAEISRQRSLGVIYMEEIVLFVDDLKLLSGIPRCRICHEEEFESSETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02775 112 CDD RING_CH-C4HC3_MARCH 62 109 - -
Pste5g02775 112 SUPERFAMILY RING/U-box 60 110 - -
Pste5g02775 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 112 IPR013083 -
Pste5g02775 112 FunFam E3 ubiquitin-protein ligase MARCH4 51 112 - -
Pste5g02775 112 MobiDBLite consensus disorder prediction 1 17 - -
Pste5g02775 112 ProSiteProfiles Zinc finger RING-type profile. 62 109 IPR001841 -
Pste5g02775 112 Pfam RING-variant domain 62 109 IPR011016 GO:0008270
Pste5g02775 112 MobiDBLite consensus disorder prediction 1 30 - -
Pste5g02775 112 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 55 111 IPR033275 -
Pste5g02775 112 SMART ringv_2 61 110 IPR011016 GO:0008270
Pste5g02775 112 ProSiteProfiles Zinc finger RING-CH-type profile. 54 112 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02775 Pste-Chr5 20059982 20061821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02775 62 112 C3H Transcription Factor Family AT2G37950 42.308 4.30e-07 44.7