Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02758 ATGAGTAGGTCGGGGCCGAAACTATTTGGTTTCCCACTAAAGGAGAAAGAGGAATTAGAAGTTGCAGAAAGGAAATACGATGTTGGAGAGGACAGAAAATTCAGGTGCCACTACTGCAAGCGAGTATTCGGGAACTCACAGGCCTTAGGGGGCCACCAAAACGCCCACAAGAAAGAGCGTGAGAGAGCGAGGCGTTTCCAAATCCACGCTCATAGACGCTCCATATCCGCTCCTGTTCTCACCTCTCATGCAAATGCAATCATAAGGCAGGAAATGGGGTCGGGTGACAGGCCTTGCGGCGGTGAGCGGAGGGTGGAGGTCGTGAGCGGCAAAAGTCACGGTTGGGGTGGTAGTCGTTCGCCGGAGGCAAGCGAAAAGGCATGGAGGTTCAGCGATCCAGAGGCAAAGAGGAAGAAAAGGATAGCGAAGTACAAGGTTTACGGCGTGGAAGGGAAGGTTAAGGCTACGCTCAAGAAAGGCCTTCGATGGATCAAGAATAAGTGTTCTCAGATCGCCCATGGCTACAAGTAG 531 0.5217 MSRSGPKLFGFPLKEKEELEVAERKYDVGEDRKFRCHYCKRVFGNSQALGGHQNAHKKERERARRFQIHAHRRSISAPVLTSHANAIIRQEMGSGDRPCGGERRVEVVSGKSHGWGGSRSPEASEKAWRFSDPEAKRKKRIAKYKVYGVEGKVKATLKKGLRWIKNKCSQIAHGYK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02758 176 Pfam C2H2-type zinc finger 34 59 - -
Pste5g02758 176 FunFam Zinc finger protein 6 22 88 - -
Pste5g02758 176 SUPERFAMILY beta-beta-alpha zinc fingers 31 61 IPR036236 -
Pste5g02758 176 Gene3D Classic Zinc Finger 14 92 - -
Pste5g02758 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Pste5g02758 176 PANTHER ZINC FINGER PROTEIN 5 6 90 IPR044299 GO:0010090
Pste5g02758 176 Pfam Domain of unknown function (DUF3511) 130 174 IPR021899 -
Pste5g02758 176 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02758 Pste-Chr5 19804177 19806962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02758 7 71 C2H2 Transcription Factor Family AT5G06650 42.466 1.62e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g02758 DUF3511 1e-25 No_clan