Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02748 ATGCCCGACCCACAAGGTTATGATGGGGTTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGGATCACATAATGATGAATTCAGTGATGTGGTTGTTAAATCAGTCCATGAACTTGCTCAAATCATGAAAGATCTCTCTGTCCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTTCTACATCTGTTGAAGAGGGTCTCAAACAGTTGCAGAAGGCAGAGAGAACTCAGAAAAAAGGAGGGACGGTTATGTGTGCAACAACGCTTTTAATAATGTGCTTTGTCATGCTAGTTCTCTTGATACTCAAGGAGATCATATTCTAGTCATATTACGGACCATTTTAGCACCCAGCATCATGTTAATTCTTCCATTGGATGTGAATATTGCAGTATGTTTAAAGACAAGTATCATTAGCACTATGATAATGCACTTCAGATATGGGAATTTGTTTTTAAAGTGCCTTGGGCTTTCATGATTGGCTCCTTGTTGAGAGGCAAATTGGGGATCTCCCTGTCATTGTACAGCGTCGCTTGGTGTAAACATAGATATTAGTTTTAACAAATTCTGTAAAGAGGGGTTTTCTCTAAGTTCATCTCCCAGTGGCCAATCATTTTTAGAAAAAAGAAGTGCTAGATAGACAATTTGGTGTTCAAAGATAGATCCTTACATATGACAAAGTAGAAGGACCACTTGTACACATCCAAGAGTCGTCAAACGTTTTCTGCCGCCGTTTATATTCCGATAGGAGGCGAAGAAAATTCAGAATTGTACTGTGATTCAGCCTTATTCAACTAACATTGGTGATGCTTGTCATTTGTCGGAGGATTTTACTGCAATGGTTAATTAATATTTTGGTCTCAAAATATTATTAGGTGT 901 0.3818 MPDPQGYDGVDLEMNFNGSKFGSHNDEFSDVVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKAERTQKKGGTVMCATTLLIMCFVMLVLLILKEIIF 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02748 115 SUPERFAMILY SNARE fusion complex 33 86 - -
Pste5g02748 115 CDD SNARE_syntaxin16 32 80 - -
Pste5g02748 115 SMART tSNARE_6 18 81 IPR000727 -
Pste5g02748 115 PANTHER SYNTAXIN 30 102 IPR045242 -
Pste5g02748 115 Gene3D - 20 114 - -
Pste5g02748 115 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 19 81 IPR000727 -
Pste5g02748 115 Pfam SNARE domain 55 107 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02748 Pste-Chr5 19696010 19698342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02748 5 115 SNARE and Associated Proteins AT5G26980 54.412 1.39e-44 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02748 5 19696010 19698342 Pste5g02748 5 19696010 19698342 ECH
Pste5g02748 5 19696010 19698342 Pste4g01246 4 9129574 9134692 ECH