Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02744 ATGGTAAAGAGCGTTAACAAGGCCTACCCGCAAACGAGGCTCGGCGTTTTCAAGGAGGCCGATCTGGAGCGGAACAAGGGAAGCTTAACTTCACTTCATGAAGAGATGAGTTACTTCCTAGAGAACCACGGGGGACAAACGCTTTACAATTATCATACATATGAATCTGATGTGATATATCTACAGCTGATCCCAAACACTTTCGTGAAGAAATTTGGAGCAGGCTTACCACAAACTCTATTTCTTAAGCCTCCAAATGGTGGAGAATGGAAATTGGAATTGGAAAAACGCGACGGTAAAATATGTGCCGTAGAAGTAGAGTATCCTATAGGAAAAGTAGAAGGTAAAATGGCCACTGATGATGAAGAAAATAAACCTCTCAAAGATGAGAATTTGGAATATAATATATCATATCGAAAGAGAAAAGATAACTTCTCATATGAATTCCTAAAACCACGTATGGGAAGTGGTAAATGTGTTAAGGTTGATAATACCATGAAATTGCCAAAGGATGCTCCGCTTCATACTGACCGAAAGGGCAAAGGAAAGGTAATAACTACCACTATGGCAGTTACGCACACAGCTTTTGAAAAAGCAAGTTGTTTCAAACCTTGTAATCCTTCATTCCTGATTATCATGCGTCCATCATACGTGCATTCTGGGCGTGCTTTGCAATTTCCATCAATGTTTTCGAAGACACACATTGATTTGCACAACAACAAGAAGGGAGATATATACCTTCAGGTGTTAAATGGGAGAGTTTGGCCTGCTAAATACCTAATACGTACTGTTGCTGAAAATAAAAGGTTTGAAATCACTACTGGATGGAAGAACTTTAGAAGGGACAATAACTTGAATGTTGGCGATGTTTGTGTCTTTGAGCTCATTCCTGGAACAGGACTCACATTCCTGATTCACATTTTTAGAGCCTCTCACAATTCAAGTTGTTCAATATTTCAAGGTAGTAGTGTTGATATGTTTTATTAA 987 0.3901 MVKSVNKAYPQTRLGVFKEADLERNKGSLTSLHEEMSYFLENHGGQTLYNYHTYESDVIYLQLIPNTFVKKFGAGLPQTLFLKPPNGGEWKLELEKRDGKICAVEVEYPIGKVEGKMATDDEENKPLKDENLEYNISYRKRKDNFSYEFLKPRMGSGKCVKVDNTMKLPKDAPLHTDRKGKGKVITTTMAVTHTAFEKASCFKPCNPSFLIIMRPSYVHSGRALQFPSMFSKTHIDLHNNKKGDIYLQVLNGRVWPAKYLIRTVAENKRFEITTGWKNFRRDNNLNVGDVCVFELIPGTGLTFLIHIFRASHNSSCSIFQGSSVDMFY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02744 328 ProSiteProfiles B3 DNA-binding domain profile. 209 311 IPR003340 GO:0003677
Pste5g02744 328 SUPERFAMILY DNA-binding pseudobarrel domain 202 311 IPR015300 -
Pste5g02744 328 Gene3D - 187 313 IPR015300 -
Pste5g02744 328 CDD B3_DNA 207 309 IPR003340 GO:0003677
Pste5g02744 328 SUPERFAMILY DNA-binding pseudobarrel domain 54 101 IPR015300 -
Pste5g02744 328 SMART B3_2 209 311 IPR003340 GO:0003677
Pste5g02744 328 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 63 313 IPR044837 -
Pste5g02744 328 Pfam B3 DNA binding domain 209 310 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02744 Pste-Chr5 19677511 19683803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02744 186 312 REM Transcription Factor Family AT1G49480 32.283 4.42e-16 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste5g02744 B3 3.5e-18 CL0405