Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02724 ATGTATAACCCCACTAGTAGAAGAACATGTACACCAGCAATGCAGTCTCATGCATCCACCAGTATTCTCACTGCGGTTTTGGTTCTACTCCTTTCTTCACTAACCCATTTCAGTATCACGGCAAAAGCAACAAGAATCCCCCAAGAAAACCACAAGCTCCACTTCCAAGTAGCCAACTCCACATGTGAGGGAACACTCTACCCGGACCTCTGCGTCTCAACCCTTGCCTCCTTCCCATGTCTTCCCTTAAAGAATGTCCCACAAATGATATGTTCCCTGGTGAACCACACCATATCCGAGGTGGCATTGTCATCCTCAAACTGCAGCAAGCTCCGAAATAAGCTCCCGGGTCTGAACAAAATCGAAGAGAGGGCTCTGGAGGACTGTATCAACCTCTTCGAGGGCACCGTTGAGGAGCTGAAAACCACCATCCTGGATCTCTCAAAAATGACAATAGGGTCGAAGCGCTACCACCACTCGCAGACTCTGCTTAGTGGCGCCATGACAAACTTGTACACCTGTCTCGATGGCTTTACGTACAATAAAGAGCACGTGAGGGAGAGGATTCAAGATGGTCTATTGGTCTGTTCGCATCACCTTAGTAACTCGCTGGCCTTGCTTAAGAAAATTCCCATACCCAACAAACCCTCCAACTCCAACAATCAGCTTTTCCCCGAATATGGTAACATCAAACACGGCTTTCCAACCTGGATTTCCCCCAAAGACCGAAAGTTGCTTCAAGCTCCTGTCAGTGAAATCAACTTCGATCTTGTTGTCGCCAAAGATGGCACTGCCAACTTCACCACTATCGGGGAAGCAGTCGCCGCCGCTCCAAACACCTCCACAACTAGGCAATATAGATTTGTGATACACATAAAAGCCGGGGCATACTTGGAGAATGTAGAGGTGGTAAGGAAGAAGACCAATCTGATGTTCGTGGGAGATGGAATTGGAAAAACTGTTGTGAAGGCCAGTAGAAACGTTGTGGACGGCTGGACCACTTTCCAATCAGCCACTGTCGCTGTGGTTGGAGACGGATTCATAGCAAAGGGTATAACCTTTGAGAACTCGGCCGGGCCCAGCAAACACCAAGCAGTGGCCCTAAGGAGTGGTGCTGACTTCTCAGCGTTTTACAAATGCAGCTTCGTAGCCTACCAAGACACTCTCTATGTCCACTCTCTTCGACAATTCTACCGCGAATGCGACATTTATGGCACCGTTGACTTCATCTTTGGCAATGCAGCAGTGGTGTTCCAGAACTGTAACTTGTACGCACGCAAGCCTAATGAAAACCAAAAGAACTTGTTCACAGCACAAGGCAGAGAAGACCCCAACCAAAACACAGGCATTTCCATCATCAACAGCAAGGTTGCAGCTGCCTCTGATTTGTTCCCAGTCAAATCTCAGTTCAACAACTACTTGGGTCGCCCTTGGAAAAAGTATTCCAGAACCGTTTATCTGAATTCTTACATGGAGGATCTGATTGACCCAAAAGGGTGGTTGGAATGGAATGGCACCTTTGCATTGGATACATTGTATTATGGAGAGTACAACAATAGGGGTCCCGGTGCTAACACAAGCGCCAGAGTTACGTGGCCTGGTTATAGGGTTATCAGAAACTCCACCGAGGCAAGCCAGTTCACGGTTCGCAATTTCATTCAAGGGAATGAATGGTTGAACTCCACCGACATCCCTTTCTTCTCTGATTTCAGTTGA 1716 0.4779 MYNPTSRRTCTPAMQSHASTSILTAVLVLLLSSLTHFSITAKATRIPQENHKLHFQVANSTCEGTLYPDLCVSTLASFPCLPLKNVPQMICSLVNHTISEVALSSSNCSKLRNKLPGLNKIEERALEDCINLFEGTVEELKTTILDLSKMTIGSKRYHHSQTLLSGAMTNLYTCLDGFTYNKEHVRERIQDGLLVCSHHLSNSLALLKKIPIPNKPSNSNNQLFPEYGNIKHGFPTWISPKDRKLLQAPVSEINFDLVVAKDGTANFTTIGEAVAAAPNTSTTRQYRFVIHIKAGAYLENVEVVRKKTNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIAKGITFENSAGPSKHQAVALRSGADFSAFYKCSFVAYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISIINSKVAAASDLFPVKSQFNNYLGRPWKKYSRTVYLNSYMEDLIDPKGWLEWNGTFALDTLYYGEYNNRGPGANTSARVTWPGYRVIRNSTEASQFTVRNFIQGNEWLNSTDIPFFSDFS 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02724 571 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Pste5g02724 571 Gene3D - 250 570 IPR012334 -
Pste5g02724 571 Pfam Pectinesterase 256 556 IPR000070 GO:0030599|GO:0042545
Pste5g02724 571 PANTHER PECTINESTERASE 31 560 - -
Pste5g02724 571 FunFam Pectinesterase 250 570 - -
Pste5g02724 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 211 IPR035513 -
Pste5g02724 571 NCBIfam pectinesterase inhibitor domain 23 209 IPR006501 GO:0004857
Pste5g02724 571 SUPERFAMILY Pectin lyase-like 254 568 IPR011050 -
Pste5g02724 571 CDD PMEI-like_3 60 211 - -
Pste5g02724 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 210 IPR035513 -
Pste5g02724 571 SMART PMEI_2 53 206 IPR006501 GO:0004857
Pste5g02724 571 Pfam Plant invertase/pectin methylesterase inhibitor 59 206 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02724 Pste-Chr5 19382827 19387828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02724 85 570 Carbohydrate Esterase AT4G02320 54.076 0.0 543