Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02719 TCGCAAACAGAGCTTCTACACTTATCAATTCAAAGGCGTGCGTTACCAGACTTGGTTAGGATGATAATTAAGTTGAGTATGAAATCTGAAATACCGAAGCGGAAACGGTGTAAGCCAGAAAGCCGCGAGATTCAGAAGAAGCTGAGAGCAATTGAGCCTTGTCCTGCTGAAGGCAATTCTGGATCCAGTGAGGTGCAGTCCAATTCGAATTCCATGGACTCGAATGGCACAATTCAAGCGAGGTGTTCCAGAGGTCGCGCTAAGAAGCTTCCCTGCAGGTTCAGTGATTCGCTTCTTTACGAACACGTCGGGTTTGATGAAGAGAATAAGAATGCTTTACAAGATATTGCTGCCAACAGAAATAAAAGAGTTTCTCTTGAGTTAAGCGAAGCTGAGTACTCGGTTAAGACCGTTAAGAAGACGATTAACGGGGCTCGTTTGTCTTTGATTAAAGAAAAAGAAAAGTTTACTCGTGATAATGCGCCTGGACTTGGTTCTGATGCCGAGGCTGCGGATGGAAATGGTAAAAGGAAGAATGAGGCTTACAGATTAGAGCATTTTGGTTTGGGTGATATAGTTTGGGCAAAAGGTGGGAATAAACATCCTTATTGGCCTGCTGTAGTCATTGATCCTTTTTTGCAAGCTCCCAGATCCGTCTTAAGCTGTTGTATTCCCGATGCACATTGCGATTATGCGTGGGTGAAGAAGGGGATGATATTTCCCTTCCTGGAATTCATGGACAGATTCCAGGAGCTGACCCAACTGCACAAAAGTAAAGTAAGTAACTTTCACAAGGCAATAGAGGAGGCAATGTTGGCAGAGAACGGCATTTTGGACTTACACTTGGGAACTGAGCAAATTATGGAGGGCGCAGATTCCCGTGTGGAACCGGAATATTCCTATAAAGATCAGGACACAATATCTTGTGCTGGCTGTAGTTTGGTGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGTTGTGCTACTCAGCATTATTGTACGCCCTGTGCAAAGTTAATAAAATCGAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCTGATGGTGGGAATTGGGTATGCTGCGATGGTTGTAAAGTTTGGGTGCATGCTGAATGTGACAAAATTTCCAGCAAACTTTTCAAGGAACTGCAAAATGAAAATACGCATTACTACTGTCCCGATTGCAAGGGAAAATTCAATAGTAAATTATCAATGGAGAATACCCAAAAATCTGTATTACCTGAAAATCTAGCTGTGGTATGCAATGGCATGGGAGGAATCTATGTTCCAAAACTTGATTTGATTATCTGCAAGTGTGGCTCGTGTGGTTCAAGGAAGCATAAACCTGCTCAATGGGAAAGACATACAGGTTGCAAAGCCAAAAAATGGAAATATAGTGTGAAAGTAGAAAGCACAAAGCAGCCGATAATAAATTGGATCGATGAACACAATCCCCGAGCTCGAATTTCCCAGCAGTTAGATCAGCAACAAATACTCTCCTTTTTGCAAGAGAAATATGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGAAGATTGGGAAGACAACAAAATTATCATCTGTAACAGGTGCCAAATTGCCGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAGGACTTTACTTCGTGGGTTTGTAGAGTCTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCACCAACGGATATCGAAATGTTATGGGTTCATGTAACATGCGCTTGGTTTCAGCCGCAAGTTCTTTTCCAAAACGATGAGGCAATGGAACCGGCCACTGGAATCCTTAACATTCCTCCTATTTCTTTTTCTAAGACTTGCGTGATCTGTAAACAAAGCCATGGTTCCTGTATAAGTTGTTTCAAGTGTGCTACATATTTCCATGTGATGTGCGCGTCAAGAATGGGGTATAGTATGGAATTGCATTCGACAGAAAAGAATGGGACTACAATAACGAAGAAGCGAATATATTGTGCAACTCACAGGGTCCCAAACCCAGATTCAGTACTGGTTGTACATACACCCATGAAGGTATTCTCACCGACAACTTCGCTTCAAAATCAGCCGCAGTGCTTCAGGGGATCGAGGCTGGTTTCATCAAAGAATGTAGAACTTCTTGAACCTTCAAACTCTGAAATTTGTGAGATTGAGCCACTGTCTGCTGCCAGGTGTCGTGTGTACAAAAGGTCTTCCAATAAGAAGGATGATGTGCCAATAATTCACTTTCTTGGGGGACCAAAGCTTCATTCTTTAAGTGCAATATCTCAACTGAACAACAATAAGGTTGCTCAAGTATCTTCTTCTCTTAAGGAAAGTCTTAAAATTTTACAGAAAACTGAAAACAAAAGAGTTTGCTTAGGGAAATCAGGTATTCATGGATGGGGACTCTTTGCTCGTAGAGACTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGTTACGACGCAGAATTACTGACCTAAGGGAAGCAAAGTATCTTTCAGAAGGCAAAGATTGTTATTTTTTTAAGATTAGTGACAACGTGGTAATTGACGCAACGGATAAGGGCAATATTGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATAGATTTGGGTGATCAGGAGAGCCGGATTGTTCTTAAGACCAAGACCAATGTTTCGGCTGGTGAAGAACTAACGTATGATTACTTGTTCGAGCCAGATGACCGGGACGAACTCAAGGTGCTCTGTCGCTGTAAAGCCCCTAATTGTAAGCATATGATTTAGGTCTACTTGTTTCTGTTCGCGGAGTCATTGCCGTTAACAACAATAGGGGAAACATTCGTTGATTCTTGTACTTTTTTTTTTTTATCTTAAATTAATTTGTATACCATTCGATTTACATAAAAAAAGGAAAATAGGCTTACAATGAGTAGGAA 2984 0.4142 SQTELLHLSIQRRALPDLVRMIIKLSMKSEIPKRKRCKPESREIQKKLRAIEPCPAEGNSGSSEVQSNSNSMDSNGTIQARCSRGRAKKLPCRFSDSLLYEHVGFDEENKNALQDIAANRNKRVSLELSEAEYSVKTVKKTINGARLSLIKEKEKFTRDNAPGLGSDAEAADGNGKRKNEAYRLEHFGLGDIVWAKGGNKHPYWPAVVIDPFLQAPRSVLSCCIPDAHCDYAWVKKGMIFPFLEFMDRFQELTQLHKSKVSNFHKAIEEAMLAENGILDLHLGTEQIMEGADSRVEPEYSYKDQDTISCAGCSLVLPCKTMKKIKDSSCATQHYCTPCAKLIKSKQYCGICKKIWHHSDGGNWVCCDGCKVWVHAECDKISSKLFKELQNENTHYYCPDCKGKFNSKLSMENTQKSVLPENLAVVCNGMGGIYVPKLDLIICKCGSCGSRKHKPAQWERHTGCKAKKWKYSVKVESTKQPIINWIDEHNPRARISQQLDQQQILSFLQEKYEPVYAKWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPPTDIEMLWVHVTCAWFQPQVLFQNDEAMEPATGILNIPPISFSKTCVICKQSHGSCISCFKCATYFHVMCASRMGYSMELHSTEKNGTTITKKRIYCATHRVPNPDSVLVVHTPMKVFSPTTSLQNQPQCFRGSRLVSSKNVELLEPSNSEICEIEPLSAARCRVYKRSSNKKDDVPIIHFLGGPKLHSLSAISQLNNNKVAQVSSSLKESLKILQKTENKRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQLRRRITDLREAKYLSEGKDCYFFKISDNVVIDATDKGNIARLINHSCMPNCFARIIDLGDQESRIVLKTKTNVSAGEELTYDYLFEPDDRDELKVLCRCKAPNCKHMI 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02719 943 SUPERFAMILY FYVE/PHD zinc finger 498 569 IPR011011 -
Pste5g02719 943 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 563 683 IPR013083 -
Pste5g02719 943 Pfam SET domain 813 918 IPR001214 GO:0005515
Pste5g02719 943 Pfam PHD-finger 535 569 - -
Pste5g02719 943 ProSiteProfiles Zinc finger PHD-type profile. 345 403 IPR019787 -
Pste5g02719 943 MobiDBLite consensus disorder prediction 48 77 - -
Pste5g02719 943 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 404 IPR013083 -
Pste5g02719 943 MobiDBLite consensus disorder prediction 59 77 - -
Pste5g02719 943 SUPERFAMILY SET domain 794 940 IPR046341 -
Pste5g02719 943 CDD PHD_ATX3_4_5_like 522 568 IPR042011 -
Pste5g02719 943 SUPERFAMILY Tudor/PWWP/MBT 186 275 - -
Pste5g02719 943 Gene3D SET domain 722 943 IPR046341 -
Pste5g02719 943 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 517 562 IPR013083 -
Pste5g02719 943 SMART set_7 802 925 IPR001214 GO:0005515
Pste5g02719 943 FunFam Histone-lysine N-methyltransferase 572 684 - -
Pste5g02719 943 FunFam Histone-lysine N-methyltransferase 777 943 - -
Pste5g02719 943 SUPERFAMILY FYVE/PHD zinc finger 344 404 IPR011011 -
Pste5g02719 943 Pfam PWWP domain 190 273 IPR000313 -
Pste5g02719 943 Pfam PHD-finger 347 402 IPR019787 -
Pste5g02719 943 ProSiteProfiles SET domain profile. 802 919 IPR001214 GO:0005515
Pste5g02719 943 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 17 943 IPR025780 -
Pste5g02719 943 Pfam PHD-zinc-finger like domain 576 681 - -
Pste5g02719 943 ProSitePatterns Zinc finger PHD-type signature. 523 568 IPR019786 -
Pste5g02719 943 PANTHER PHD FINGER PROTEINS 50 926 - -
Pste5g02719 943 SMART PHD_3 626 682 IPR001965 -
Pste5g02719 943 SMART PHD_3 347 401 IPR001965 -
Pste5g02719 943 SMART PHD_3 522 569 IPR001965 -
Pste5g02719 943 CDD SET_SETD1-like 796 940 - -
Pste5g02719 943 ProSiteProfiles Zinc finger PHD-type profile. 520 571 IPR019787 -
Pste5g02719 943 Gene3D - 177 278 - -
Pste5g02719 943 ProSiteProfiles Extended PHD (ePHD) domain profile. 562 682 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02719 Pste-Chr5 19284401 19293523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02719 311 372 EF-hand Containing Proteins AT5G28340 54.839 2.05e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste5g02719 SET 3.4e-18 No_clan