Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02707 ATGGCTAACCAAGTTACTACTCTTGATAGAGCAAGTAGTTCTTTCAAAACTTGCAATCCATTCTTCTTGGTTATCATGCAACCATCGTATGCTGGTCCACGTTTCTGTCTGATGATCCCAAATAAGTTTGTGGAAATATATGGACAAGGCTTACCAAATACTCTGTTTCTCAAGACGCCTAATGGTGCTGAGTGGAAAATGATTTTAGAAAAAAGTAATGGTAAAATATGGTTTCAAAAGGGTTGGAAAGAGTTTGCCGAATATCACTCTCTAACTCATGGCCATTTTTTGGTTTTCAAATACAAAAGAGCTTCATATTTTCAAGTACAAATATTTGATTTGAGTGCCTTAGAGATTGAGTATCCTTCTAAAAGAATCAAAGATAAAAAAGCCAACGATAATAAAGGAAACAAACCTCCAAATGATGAAAATTTGGAGTGTCCTGGACCAAGGCGAAAGAGGAAAGCTAACTCAACATCGGAATGTCTTCAACCATATCAAATGAGAAGACAAAATAAGAAAGTTAAAGTTGAGAACAGTTTGATATTGCCAAAGAAGGCTCTGCATCCAACTAATACAAAGTGCAAAGAACAATCAAAAGCTATTGCCAACCAAGTTACAGCTCTAGATAGAGCAAGTTCTTTCAAACCTTGTAATCCTTTCTTCTTGGTTGTGATGCGTCCATCATACATTCATTCTAAGGGTGGTCCTCTGACTTTACCACCAAAATTTTGTAGGAAACACTTCAATTCTGACAAGAACCGTGTGTTTGTCAACCTCCAGCTGTTAAATGGGAAAGTTTGGCCTGCAAAGTACCTGATAACAAATGCCATTTCAGGAACAAATTATAAACTCTCAAGTGGATGGGGGCAATTTGTCAAGGACAATAACTTCAATGTTGGTGATGTTTGCATCTTTGAACTCACTGATAGAACGAAGCTAACCTTCCTGGTTCACATCTTTAGAGATATAGATGCTTCAAATTGTTCAACATCGCAATAG 1002 0.3693 MANQVTTLDRASSSFKTCNPFFLVIMQPSYAGPRFCLMIPNKFVEIYGQGLPNTLFLKTPNGAEWKMILEKSNGKIWFQKGWKEFAEYHSLTHGHFLVFKYKRASYFQVQIFDLSALEIEYPSKRIKDKKANDNKGNKPPNDENLECPGPRRKRKANSTSECLQPYQMRRQNKKVKVENSLILPKKALHPTNTKCKEQSKAIANQVTALDRASSFKPCNPFFLVVMRPSYIHSKGGPLTLPPKFCRKHFNSDKNRVFVNLQLLNGKVWPAKYLITNAISGTNYKLSSGWGQFVKDNNFNVGDVCIFELTDRTKLTFLVHIFRDIDASNCSTSQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02707 333 Gene3D - 201 326 IPR015300 -
Pste5g02707 333 Gene3D - 2 115 IPR015300 -
Pste5g02707 333 PANTHER B3 DOMAIN-CONTAINING 13 319 - -
Pste5g02707 333 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Pste5g02707 333 MobiDBLite consensus disorder prediction 128 158 - -
Pste5g02707 333 CDD B3_DNA 220 322 IPR003340 GO:0003677
Pste5g02707 333 SUPERFAMILY DNA-binding pseudobarrel domain 217 323 IPR015300 -
Pste5g02707 333 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Pste5g02707 333 Pfam B3 DNA binding domain 222 322 IPR003340 GO:0003677
Pste5g02707 333 SMART B3_2 222 324 IPR003340 GO:0003677
Pste5g02707 333 SMART B3_2 22 115 IPR003340 GO:0003677
Pste5g02707 333 ProSiteProfiles B3 DNA-binding domain profile. 223 324 IPR003340 GO:0003677
Pste5g02707 333 MobiDBLite consensus disorder prediction 128 162 - -
Pste5g02707 333 CDD B3_DNA 20 113 IPR003340 GO:0003677
Pste5g02707 333 SUPERFAMILY DNA-binding pseudobarrel domain 18 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02707 Pste-Chr5 19075168 19080250 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02707 37 322 B3 DNA Binding Superfamily AT3G18990 32.000 3.34e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste5g02707 B3 1.1e-19 CL0405