Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02705 TACACCTTTTGTCATCCATTTCCCTCTTGTGTCGTGTCTCGTCCTGAAATCAAAAACCCTAACCTCTTAAGTTTTCTCCGCAACGCCACCGATTCGCAATCCCCACTAATCGAAGAAAAGAAAATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCCGGTGATATCCGTGAAAGGGAAGTTGAAGATTTGTTTTTGAAGTATGGACACATAACACACATTGACTTAAAGGTTCCCCCAAGACCACCGGGCTACGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGGTACAGTAGTCACAGCAATGGCCGGGCTGGACGTGGGGTATCTAGGCGCTCTGAATATCGTGGATCACATGCGGAAGGCGGGGATGTTTGCTTTTCTCAAGTTTTCCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGGTTATGTTCGTGTGAGGGAATATGATTCAAGGCGAGATTCCTCTAGAAGTCCTAGTCGTGGCCCATCCCATTCTAGAGGAAGAAGCTATAGCCGCAGTCGAAGCCGTAGCCGTAGTTACAGTCGGGACCGGAGCCTAAGCAAATCTCCAAAGGGTAAATCTTCGCAGCGTTCACCTGCTAAATCTCCATCAAGATCTCCCTCTCGATCGCGCTCAAGATCTAGGTCCCGTTCGTTATCAGGTACTATTTGTCTGATTCGATCATTTTATCCTGACACACAAAACTATTGTTCACATTCCCTCCCTTGTCAAGGTTTTCCCTGTCATGCTTTGTTCATGCGGAACTTGGTGAAACTTGCCTCAATGTCGGAGTGTTCTCTCAGTGTCCTTTTTATATGGAAACTTGCAGCTTACTGGAAATTGGAAATTAGGATCTTGGTGGGATTTGATTCAATTGTCTGCAACTCATTTTGTTGGGGAGGTATGATATTTTTTAGAATGGGCGACTTTGGATACCTTCACAGTACATCTGTTCTAATACTTTTAGCATGTAAATGTCCATGGGTGCTAGATTGGGAATCAAGGAGATCATGGATTGCCATTTTAGAGCTGGATTGTGATGCACTATCTGGATTTTGTGGTGCAGTAGGGAAGATTTCTTTTCTCCTGACAATTGGTGCCTTAATATGTCACGCTGAGATGGTCTATTTTTTTAATTCACTTTTCATCATTCTATGCATAATGGTTATTATTTACCCTTTTTCAGTCTTATATCTTTGTTTGTCTGTTTTATATTTTATGATGCTTGCTTTTATCTCCTTGAATATGTTAAACTCTGACACGGGAGAGGCATCAAGGCTCTTGGATCAATTTGATAAGGGAACTAATCACGGTCCAGGTCCAGGTCTCCATTGCCTTCGCGTAATAAAAGTCCCAAAAGGCGAAGCGCTAGCAGGAGTCCTAGCAGGAGCAGAAGCAGGAGCAAGAGTTTGTCTCGGTCTATATCTTAAACCCTGGATGATTTTGCCTTTGCATTCTTTTGACCTCGTCAATATATATTTTGTTTGGGTGTGTTGGATTTATTATGTTCAAATATCTTTGGAACTAATTGGGCCTTGGTCTGACAGATGAGCTATGATTGTTGCATTTGACAAAGTTGTGGATGGTGGGTGCTGCCAAGATTTTCTAGTAAAATTGACATTAGCAAACAAAAACAATTATTTGGGTTATGCTTTGAATTGAACTTGAGACTTCTATTTCGTAGCGTCTTAGTTTTAATATTGAGGATTTGACAGACCCTAGATTTCTGTAATAGACTGTTCTGTTGAATGTCAAAACATGCGCTATTTGGTTCACTATGCCGCTTTATTTCAATATTATAGACTGTTAAATTTAATATGAAAAATTAAATATACATTTCAG 2034 0.4169 YTFCHPFPSCVVSRPEIKNPNLLSFLRNATDSQSPLIEEKKMSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRAGRGVSRRSEYRGSHAEGGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSLSKSPKGKSSQRSPAKSPSRSPSRSRSRSRSRSLSGTICLIRSFYPDTQNYCSHSLPCQGFPCHALFMRNLVKLASMSECSLSVLFIWKLAAYWKLEIRILVGFDSIVCNSFCWGGMIFFRMGDFGYLHSTSVLILLACKCPWVLDWESRRSWIAILELDCDALSGFCGAVGKISFLLTIGALICHAEMVYFFNSLFIILCIMVIIYPFSVLYLCLSVLYFMMLAFISLNMLNSDTGEASRLLDQFDKGTNHGPGPGLHCLRVIKVPKGEALAGVLAGAEAGARVCLGLYLKPWMILPLHSFDLVNIYFVWVCWIYYVQISLELIGPWSDR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02705 580 MobiDBLite consensus disorder prediction 113 156 - -
Pste5g02705 580 Gene3D - 159 213 IPR012677 -
Pste5g02705 580 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 42 151 - -
Pste5g02705 580 SUPERFAMILY RNA-binding domain, RBD 159 227 IPR035979 GO:0003676
Pste5g02705 580 CDD RRM1_SF2_plant_like 49 119 - -
Pste5g02705 580 MobiDBLite consensus disorder prediction 211 280 - -
Pste5g02705 580 MobiDBLite consensus disorder prediction 255 280 - -
Pste5g02705 580 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 117 IPR000504 GO:0003723
Pste5g02705 580 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 123 IPR000504 GO:0003723
Pste5g02705 580 MobiDBLite consensus disorder prediction 113 157 - -
Pste5g02705 580 MobiDBLite consensus disorder prediction 240 254 - -
Pste5g02705 580 Gene3D - 27 158 IPR012677 -
Pste5g02705 580 SUPERFAMILY RNA-binding domain, RBD 44 149 IPR035979 GO:0003676
Pste5g02705 580 SMART rrm1_1 49 119 IPR000504 GO:0003723
Pste5g02705 580 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 40 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02705 Pste-Chr5 19068248 19073389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02705 44 119 Eukaryotic Initiation Factors Gene Family AT3G11400 34.177 9.11e-06 46.2