Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02703 ATGATCCCAAAGAAATTTGTGGACAAATATGGAGAAAGCTTACCAAATACTTTATGTCTTAAGACACCCAATGGGGCTGAGTGGAACTTGAATTTGGAAAAATGTGATGGTAAAATATGGTTTCAGAAGGGTTGGAAAGAATTTGCAGACTGTCACTCTCTATCTCATGGGCATATTTTGCTTTTCAAATGTGAAACAACTTCCCATTTCAAAGTACAGGTGTTTTATTTGAGTGCCTTAGAGATAGACTACCCTTCAAAAGGAAAAGAAGGTAAAGTGTCCTCCAATAATCAAGGAAATAAACCTCTAGATGATGAAAAATTCGAACGTAACAGACCGGGTCAAAAGAGAAAAGATAACTCCTTATCGAAATCTCTTCAAACATATCAAATAAGAAGTCATAAGCATGTTAAGGTTGATGAAAGCTTGATATTGCTGAAGAAGGCTCTGCATCATACTGACATAAAGTGCAAAGATCACAAAATGTTTTGTCTTACCAGCAGTGGTAATTTTGCAGAAGAATCAAACGTTATTGCTAATCAAGTAACTGCTCTAGAAAGAGCAAGTTCTTTCAAACCTTGTAATCCCTTCTGCATTGTTGTAATGCATCCATCATATGTCCTTTCTAATGGTGGTCCTCTGAGTTTACCATCGAAGTTTTGTAAGAGACACTTTGATTTGTGCAAGAAACAAAGAGTTATTAACCTTCAGCTGTTAAATGGGAGAGTTTGGCCTGCAAAGTGTACCATGAACACTAAAGGCAATACAAGAATAAATTTTAGACTCTCAAGTGGATGGAAGCCATTTGTCAAACACAATAATTTGAAAGTTGTTCGTATTGTTCAACATCTCAGGCTTCTGGCCAAATTTGAACAGGTTCTCAAGAATAGAGAAATGAAACCAAAACCTTCTCTGCTTTGTATGAAGCTAACTTTGTTTGATACTACTACCAAATATTTGGCATTTATGTTACCAGTTGACTTTGTTAAGAAATATGGAGAAGGCTTACCTAATACACTATTTTTTAAGACACCAAATGGTGCTGAGTGGAGATTGAAATTGGAAAAACATGATGGTAAAATATGGTTCCAAGAGGGCTGGAAAGAATTTGCAGACTATCACTCTCTGGTTCATGGACATCTTTTGCTTTTCAAATGGGAAAGAACTTCCCATTTTCAAGTACACATATTTGATTTGAGTGCAGTAGAGATAAATTATCCTTCAAAGAGGACAAATGGTGAATTGTCCTCCAATAATCAAGTAATTAACCTTCCAAATGAAGAAAATTTGGAAAATCACATACCAGATCAAAATAATAATTCTTCATTGGAATTACTTCAACAATATCAAATGAGAAGTGGTGAGTCTGCTGAAGTTGAGAACACAAATCCTTACACAAAGAGCAAAGGAAAATCCAAGGCTATGGCTAACCAAGTTACAGCTTTTGACAGAGCAAGTTCTTTCAAACCCTGCAATCCATTCTTCTTGGTTGTCATGTATCCAACATACATCAACGGTTGTTCTTTGCATTTACCAAGTAAGTTTTGTAGCATGCACCTTGATTTGCACAAGAAGGCGAGATTTATTAAACTTAAGATTGTTTGGTCTACCAAGTGTCTGAGGATCCTTGTAGACCAAACCAGAAATAAATTTATTCTCTCAAATGGATGGAAGGCATTTAGCAGAGACAATAACTTGAATGTTGATGATGTTTGCATCTTTGAGCTCATTAATAGAACTGAACTAACCTTCCTGGTTCACATCTTTAGAGAGACAAACAGTTCAAATTGTTCAACATCTCAAGAAGCAAAACCAATCCACTTTTTCAAGATCATAACAGCTTCAAATCTCCATGAAGAAAAGCTAATGATTCCAGTTAAGTTTGTGAAGAAATATGGAGAAGGCTTACCTAATACACTATTTCTTAAGACTCCAAATGATGCTGAGTGGAAATTGAAATTGGAAAAGGGTGATGGTAAAATATGGTTTCAAAATGGTTGGAAAGAATTTGCAGAGTATCACTCTCTAGCCCATGGCCATATCTTGCTTTTCAGATGCCAAACAACTTCCCATTATCATGTACACATATTTTATATGAGTGCGTTAGAGATAGACTATCCTTCAAAGATTACTGATGGTAAATTGTCCTCCAATCATCAAGTAAGTAACCCTCCAAATGAAAAAAACTTTGAAAATCACATAACAGGTCAAAATAATACAGAAGATTCCTCATTGGAATCTCTTCAACCATGTCAAATGAGAAGTCGTAACTCTGCTAAAGTAGGGAACAAAATGATATTGTCAAAGGAGGCTCTGCATCATACAAACACAAAATGCAAAGGAAAATCCAAGACTATGGCTAACCAAGTTACAGCTCTTGAAAGAGCAAGTTCTTTCAAATCCTGCAATCCTTTCTTCTTGGTTGTCATGCATCCTTCATACATTCGAAATGGTCCTTTGCATGTACCATCTAATTTTTTTAGAACACACTTTGATTTGCACGAGGAGCAAGGACCTATCATCAATCTTGTGTTAAGTGGAAGAGTTTGGCCTGCAAAGATCTTCATCAAAAAAGTCAAAAGTACAAAAAAATTTAGATTGTTAAGTGGATGGAACAAATTTTCCCAGCACAATAACTTGAAAGTTGGTGATGTCTGCATCTTTGAGCTCATTGAAAGAAAAACTAAACTAACCTTCCTGGTCCATATTTTTAGAAAGACAAAGAGTTCAAATTGTTCAACATCTAAA 2748 0.3555 MIPKKFVDKYGESLPNTLCLKTPNGAEWNLNLEKCDGKIWFQKGWKEFADCHSLSHGHILLFKCETTSHFKVQVFYLSALEIDYPSKGKEGKVSSNNQGNKPLDDEKFERNRPGQKRKDNSLSKSLQTYQIRSHKHVKVDESLILLKKALHHTDIKCKDHKMFCLTSSGNFAEESNVIANQVTALERASSFKPCNPFCIVVMHPSYVLSNGGPLSLPSKFCKRHFDLCKKQRVINLQLLNGRVWPAKCTMNTKGNTRINFRLSSGWKPFVKHNNLKVVRIVQHLRLLAKFEQVLKNREMKPKPSLLCMKLTLFDTTTKYLAFMLPVDFVKKYGEGLPNTLFFKTPNGAEWRLKLEKHDGKIWFQEGWKEFADYHSLVHGHLLLFKWERTSHFQVHIFDLSAVEINYPSKRTNGELSSNNQVINLPNEENLENHIPDQNNNSSLELLQQYQMRSGESAEVENTNPYTKSKGKSKAMANQVTAFDRASSFKPCNPFFLVVMYPTYINGCSLHLPSKFCSMHLDLHKKARFIKLKIVWSTKCLRILVDQTRNKFILSNGWKAFSRDNNLNVDDVCIFELINRTELTFLVHIFRETNSSNCSTSQEAKPIHFFKIITASNLHEEKLMIPVKFVKKYGEGLPNTLFLKTPNDAEWKLKLEKGDGKIWFQNGWKEFAEYHSLAHGHILLFRCQTTSHYHVHIFYMSALEIDYPSKITDGKLSSNHQVSNPPNEKNFENHITGQNNTEDSSLESLQPCQMRSRNSAKVGNKMILSKEALHHTNTKCKGKSKTMANQVTALERASSFKSCNPFFLVVMHPSYIRNGPLHVPSNFFRTHFDLHEEQGPIINLVLSGRVWPAKIFIKKVKSTKKFRLLSGWNKFSQHNNLKVGDVCIFELIERKTKLTFLVHIFRKTKSSNCSTSK 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02703 916 Pfam B3 DNA binding domain 1 75 IPR003340 GO:0003677
Pste5g02703 916 Pfam B3 DNA binding domain 321 398 IPR003340 GO:0003677
Pste5g02703 916 Pfam B3 DNA binding domain 494 591 IPR003340 GO:0003677
Pste5g02703 916 Pfam B3 DNA binding domain 200 277 IPR003340 GO:0003677
Pste5g02703 916 Pfam B3 DNA binding domain 805 906 IPR003340 GO:0003677
Pste5g02703 916 Pfam B3 DNA binding domain 608 697 IPR003340 GO:0003677
Pste5g02703 916 CDD B3_DNA 322 398 IPR003340 GO:0003677
Pste5g02703 916 SMART B3_2 805 907 IPR003340 GO:0003677
Pste5g02703 916 SMART B3_2 307 400 IPR003340 GO:0003677
Pste5g02703 916 SMART B3_2 608 700 IPR003340 GO:0003677
Pste5g02703 916 SMART B3_2 495 592 IPR003340 GO:0003677
Pste5g02703 916 SMART B3_2 1 78 IPR003340 GO:0003677
Pste5g02703 916 SMART B3_2 198 300 IPR003340 GO:0003677
Pste5g02703 916 MobiDBLite consensus disorder prediction 715 747 - -
Pste5g02703 916 SUPERFAMILY DNA-binding pseudobarrel domain 301 407 IPR015300 -
Pste5g02703 916 CDD B3_DNA 607 697 IPR003340 GO:0003677
Pste5g02703 916 CDD B3_DNA 1 75 IPR003340 GO:0003677
Pste5g02703 916 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Pste5g02703 916 MobiDBLite consensus disorder prediction 87 123 - -
Pste5g02703 916 ProSiteProfiles B3 DNA-binding domain profile. 307 400 IPR003340 GO:0003677
Pste5g02703 916 PANTHER B3 DOMAIN-CONTAINING 600 902 - -
Pste5g02703 916 SUPERFAMILY DNA-binding pseudobarrel domain 1 85 IPR015300 -
Pste5g02703 916 CDD B3_DNA 805 905 IPR003340 GO:0003677
Pste5g02703 916 SUPERFAMILY DNA-binding pseudobarrel domain 801 907 IPR015300 -
Pste5g02703 916 SUPERFAMILY DNA-binding pseudobarrel domain 488 591 IPR015300 -
Pste5g02703 916 MobiDBLite consensus disorder prediction 102 119 - -
Pste5g02703 916 ProSiteProfiles B3 DNA-binding domain profile. 494 592 IPR003340 GO:0003677
Pste5g02703 916 SUPERFAMILY DNA-binding pseudobarrel domain 193 277 IPR015300 -
Pste5g02703 916 CDD B3_DNA 196 277 IPR003340 GO:0003677
Pste5g02703 916 ProSiteProfiles B3 DNA-binding domain profile. 199 298 IPR003340 GO:0003677
Pste5g02703 916 Gene3D - 178 282 IPR015300 -
Pste5g02703 916 Gene3D - 784 908 IPR015300 -
Pste5g02703 916 Gene3D - 474 595 IPR015300 -
Pste5g02703 916 CDD B3_DNA 494 590 IPR003340 GO:0003677
Pste5g02703 916 SUPERFAMILY DNA-binding pseudobarrel domain 603 698 IPR015300 -
Pste5g02703 916 ProSiteProfiles B3 DNA-binding domain profile. 607 700 IPR003340 GO:0003677
Pste5g02703 916 Gene3D - 306 401 IPR015300 -
Pste5g02703 916 Gene3D - 1 78 IPR015300 -
Pste5g02703 916 Gene3D - 599 701 IPR015300 -
Pste5g02703 916 ProSiteProfiles B3 DNA-binding domain profile. 805 907 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02703 Pste-Chr5 19047308 19063756 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02703 608 905 B3 DNA Binding Superfamily AT3G18990 25.369 1.62e-33 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste5g02703 B3 3.5e-17 CL0405