Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02700 AATTTTCGATCCTCCACTTCTTCATATGCTAAAACATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGCCAAGAGAAGAAGCTTCCTGGCGTTGGATTCAAGAAGCTCAAGAAGATCCTTAAGAAGTGCAGAAGAAACTCTTCATCCCTTCCCGCCATAACCTGCCCCGACCATTGCCCAGTGTGCGATGGGACCTTCTTCCCTTCCCTTCTGAATGAAATGTCAGATGTTGTGGGCTGTTTTAATCAGCGCGCGCAGAAATTGTTGGAGCTGCATCTTGCTTCTGGCTTCAGAAAGTACTTTTTCTGGATCAAAGGCAAATTGCAAGGGAACCACACTGCTCTTATTCAAGAAGGCAAAGATCTTGTTACTTATGCACTCATAAACGCCATTGCTATTCGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTGTTCAAGTCTCAGGTCCAGAGTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCATATCAATTTAAGGGAGACTAAGGTCAAGTCAAGGAAGGCACCTGCTTTCTTCGATGGATGTTCTCTCACATTGAAGGATGGGAAACCCTCACTTACTTGTGAGCTCTTTGATTCTATCAAGGTTGACATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTCGATCCAGTTTCTCTGACTTGTGGCCATATATTCTGCTATATTTGTGCTTGCTCAGCTGCTTCAGTATCTATTGTTAATGGACTTAAGAATGCTGATCATAAAGGGAGATGTCCTCTATGTCGTGAGGGTGCAGTTTATGAAGGTGCTGTGCGCTTGGAAGAACTGAATATTCTGTTAAGCCGAAGCTGTCAGGAGTACTGGGAGCAGAGGCTTCAGACAGAGAGACAGGAGAGGGTTAAGCTAATAAAAGAACACTGGGATTCACAGTGTAGGGCATTCGTGGGCGTCTAAGTACAAGATAGAATTTCTTAGTCTCTTTGGTATAGTATAAGGATTGTAATTTTAGGGGGAAATGTGAATATGCATCTGTTTCACTGTTTCATTGTTCTTATGTATGTAACATTCTCAATAAGGCGACCTTTTAAACTATAAGTGCGATTGCATGTTTTCTATGGTGTACACAGCGGATGATGAAGTTACTTTTTGG 1185 0.4177 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRRNSSSLPAITCPDHCPVCDGTFFPSLLNEMSDVVGCFNQRAQKLLELHLASGFRKYFFWIKGKLQGNHTALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAPAFFDGCSLTLKDGKPSLTCELFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVNGLKNADHKGRCPLCREGAVYEGAVRLEELNILLSRSCQEYWEQRLQTERQERVKLIKEHWDSQCRAFVGV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02700 317 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Pste5g02700 317 SMART ring_2 213 261 IPR001841 -
Pste5g02700 317 CDD RING-HC_BAH1-like 203 276 - -
Pste5g02700 317 ProSiteProfiles Zinc finger RING-type profile. 213 262 IPR001841 -
Pste5g02700 317 Pfam Zinc finger, C3HC4 type (RING finger) 210 263 - -
Pste5g02700 317 CDD SPX_BAH1-like 2 140 - -
Pste5g02700 317 ProSiteProfiles SPX domain profile. 1 144 IPR004331 -
Pste5g02700 317 SUPERFAMILY RING/U-box 206 265 - -
Pste5g02700 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 316 IPR033326 -
Pste5g02700 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 315 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02700 Pste-Chr5 19001429 19004126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02700 213 273 C3H Transcription Factor Family AT4G27470 36.066 1.10e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02700 5 19001429 19004126 Pste5g02700 5 19001429 19004126 ECH