Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02654 TCTCCTGTTGAGATGTCAAATATGTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGAGGATGAAGTTCATCAAGAAAGCCAGCTACAAAACCAACTTCATGACTCAAGTTCAGGACCATCCGGTGCTTGCAATAGCAATGACTCCACTAATCAACTACAAAACAAGAAGAAACGAAACCTTCCTGGAACCCCAGGCAAACTTCAATTTTTTAACTGTAAAGAAACTGTTGCTTTATTAAACTTAATGCTTCTAATTTTGTTTCTAGCTACAAAAGTATTCAAGTTAAAAAGAACTATATCGTCAGCAAATTACAATAAATTCCCCGATTCTAATTCTATGTATATATACTCTTTCTCTGAAATGGTTAATCTGCTCAGAGTCTTTCCTAATCCTAATGCTGAGGTTGTTGCTTTATCACCGAAAACACTAATGGCAACAAATAGATTCGTGTGTGAAATCTGCAACAAAGGATTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTAAGGCAAAGAACAAGCACTGAGGTAAAGAAACGGGTGTATGTGTGCCCTGAGCCATCATGCGTCCACCATAATCCAGCTCGTGCATTAGGGGACCTCACTGGCATCAAAAAGCACTATAGCCGCAAACATGGTGAGAAGAAATGGAAATGTGACAAATGCTCTAAAAGATACGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGAGAGATAGTTTTATCACCCACCGAGCTTTCTGTGACGCATTGACTGAGGAAAACAACCGAGTGAACCAGGGATTAGCAAGTGGCATTCCACCAAACTTGCAAGGTCAAATACCGGATCTTATGTCGACCATACCTCTAAACACTAGTCCAAACAAAGCATCCAAATTCGGGGACTATGACTCCAAGAACCCACTAAAATCACTCACCCAAGAACTTGTCCCAATACCATTCAAGTCTATGAGCATGGGTGGGGGCATGTTCTCCACCAATGCAGGTGCACTTTTTGGTGGCCCAAAAAGCATGTCTCCCTCTTCTTCCAGCCTCCAGCTAGGCTCCAACACCTCATCAAGCTTCAATTACGTGCAAGATAACAAAAATGGAGGACTGATTGCTGGCTCAGCTCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAATAGCATTAACTCGCCCATGATGCAAAAAGGCTTTGTTAGTGGCACTTCTGGTCCTGATCACATTTCTTCCACTAAGCCACCATATTCTGGTGCCATGCTTCAGCATAACAACTCCTATGAACACTTCTCTCCACAGCCTGATCTGTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCATTCATCAATCAATTGTTTCATAATGGACAAGAAATTTCACAAGTTTTTGACACTAACACTACCGGATCTGCAATGAATGATGTGGGAATGTTCGGCCAAATGTCAATGGGAAGTGACCACAACCCGGGATTGATGAAGAATGCGGAACAAGAGGTTAGTAATAGTTCGACCTTGATCCATGCAAGAAATGTGCCAGAAGGTAACCCAATGCAGCCAACTAGGTTTGGAGGGAATGACATGACAACTGTTCATGACTTCTTGGGTATTGGTGGTTCCACTTCAAGAGTTATGACTCATTTTCATCACCATTTTCCGCACGACAGTTCAGCTATGGAGGAACCTATGTGGGATACTAATCAT 1791 0.4299 SPVEMSNMSGDEGSFSSGNNEDEVHQESQLQNQLHDSSSGPSGACNSNDSTNQLQNKKKRNLPGTPGKLQFFNCKETVALLNLMLLILFLATKVFKLKRTISSANYNKFPDSNSMYIYSFSEMVNLLRVFPNPNAEVVALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLASGIPPNLQGQIPDLMSTIPLNTSPNKASKFGDYDSKNPLKSLTQELVPIPFKSMSMGGGMFSTNAGALFGGPKSMSPSSSSLQLGSNTSSSFNYVQDNKNGGLIAGSAQMSATALLQKAAQMGATASNSINSPMMQKGFVSGTSGPDHISSTKPPYSGAMLQHNNSYEHFSPQPDLSNMAGVSGGGAFINQLFHNGQEISQVFDTNTTGSAMNDVGMFGQMSMGSDHNPGLMKNAEQEVSNSSTLIHARNVPEGNPMQPTRFGGNDMTTVHDFLGIGGSTSRVMTHFHHHFPHDSSAMEEPMWDTNH 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02654 597 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Pste5g02654 597 Gene3D Classic Zinc Finger 206 285 - -
Pste5g02654 597 Gene3D Classic Zinc Finger 132 196 - -
Pste5g02654 597 Pfam Zinc finger, C2H2 type 151 173 IPR013087 -
Pste5g02654 597 FunFam protein indeterminate-domain 12-like 130 198 - -
Pste5g02654 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
Pste5g02654 597 MobiDBLite consensus disorder prediction 1 60 - -
Pste5g02654 597 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 575 IPR031140 -
Pste5g02654 597 MobiDBLite consensus disorder prediction 1 62 - -
Pste5g02654 597 FunFam protein indeterminate-domain 5, chloroplastic-like 205 284 - -
Pste5g02654 597 SMART c2h2final6 151 173 IPR013087 -
Pste5g02654 597 SMART c2h2final6 192 222 IPR013087 -
Pste5g02654 597 SMART c2h2final6 227 247 IPR013087 -
Pste5g02654 597 SUPERFAMILY beta-beta-alpha zinc fingers 150 248 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02654 Pste-Chr5 18726497 18729228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02654 102 434 IDZ Gene Family AT3G50700 51.549 1.06e-102 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g02654 zf-C2H2 0.0062 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02654 5 18726497 18729228 Pste5g02654 5 18726497 18729228 ECH