Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02619 GTGTTTTACGCCATGGTGAAGCAGTAGGGTTGGCTCACGGTTGAAGTTGAAATAACATATATAGTGTATTAGGTTAGAATTTTGGTGTTTTATGGAATGTTGTAGATGAATGGTGTGATAAGAGTTAGTAAGGAATAAAATTGTGTGTTGTGGGTTGTGGGAAATGGAAGGTCGCCGGAGGGTAACACTACATGAACAAATGTCAGCTTCCGATCACAGCCGAGCGCGAGTGCTAGCCGGCTTGACCCTTGACGACGTGTTAGCGAACCAGAAGAGACCTTCTTCCACGCCACCAACCCAACCACCACCCAAGAGCCGAACCCTACTTGACATCATCAAAGAAGACGAGACCAACAAGAAGGACCGCAGATCTTGGAAAGCATTCAAAGACAAGCTTAGACTAAAGCGCGCAGGGTCTGCTTGGACGTCGTCAATTCATATCCCAACTTCGGATTTTCCTGTTCCTAACCCGAATAGCAGAACCTTTACCCAGCTTGGTCGTCGCAACTCGATTCGACCAGCGAATCAGACTCAGATTCACTCCGACTCGGAAATCGCAACTCAATACATGGCTCACCAGGTGGAGGACCTCGATCCCACCGCCATCGACGAGACCGAATCTCCGGTCAAGTCTGCCACGCGCCCCCAGTTCATGCGCCACGGCTCCACTCGCTTCGCCGGCGACACCACCGACAACACCGCCGGCACGCTCCGGCCGCAGCTCTCGCGGAGGAACTCGTCGAACGTGACGTCGGAGCCGTACCGGCGAGGGCGCGTGGTGACGTTCCGCGACAGCTTCGACGATGACGAGGGGGAGGAGGACGGGGAGAAGCCGGGGGAGGGGAGGGCGCTGTCGGCGCGTGAGGCGGTGGCGGCGCAGGAAGCGGCGGAAGCGGCGGCGGCGGAGGAGGCGGCGGCGAAGGAAGCGGCGCAGGCGCCGGTGACGATGTCGCTGATGGACTTGTTGGAGGAGACTGATAGGGAAATGGGGCTTGAAGGGTCAAGGTATATATTGAATGATGATGAGGATTTTGACGAGGATGAAGATGAAGATGGTGAAAATGATGATGAGGATGGTGTGGGTTCAATGGAATACAGTTGCTGCATCTGCATGGTCAGGCATAAGGCTGCTGCTTTTATACCCTGTGGTCACACTTTCTGCAGGTTGTGTTCAAGGGAGCTTATGATTAGTAGGGGGAATTGCCCTCTCTGCAACAATTTTATTCTTGAGATTCTTGACATCTTTTGAGATTTCTATTTCTTTGTAATTTCTGGGTATTTGTTGTTCTTTTCTTATTTCTAAAATTTTCTGATTTATTGTTACTGTTGTTGATTATTATTACTACTATTTTGGGTTTGTTTCTTCTTCTTCCTCTTTGTGAGGTTCTGTTCTAGAGTGTTGTAAATAGGAGTGTGGATGATGATCTTACTGTTTCTTTTTCCCATGCATAGAGATGAGGTTTTCTGGGAGTTTGTATTTTCACTGGCTCACAACTGTGTAATTTGTGTTGCGAAGTGGAGATTATGGAGAATGAGAAAGGCCTACAAAGGGTTTTTATTTCTTTCCTTTAAGTTAGAAAGACATGTTTCTGCAATTCAAGTGGTGGAGCTTGTATCAGAAGAATTTCTATGTTTTATTACGCTGCTTTTTCTTTTTTTCATGAATAGAGCTGAAGATTTTCTGAT 1686 0.4834 MEGRRRVTLHEQMSASDHSRARVLAGLTLDDVLANQKRPSSTPPTQPPPKSRTLLDIIKEDETNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDFPVPNPNSRTFTQLGRRNSIRPANQTQIHSDSEIATQYMAHQVEDLDPTAIDETESPVKSATRPQFMRHGSTRFAGDTTDNTAGTLRPQLSRRNSSNVTSEPYRRGRVVTFRDSFDDDEGEEDGEKPGEGRALSAREAVAAQEAAEAAAAEEAAAKEAAQAPVTMSLMDLLEETDREMGLEGSRYILNDDEDFDEDEDEDGENDDEDGVGSMEYSCCICMVRHKAAAFIPCGHTFCRLCSRELMISRGNCPLCNNFILEILDIF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02619 361 ProSiteProfiles Zinc finger RING-type profile. 313 351 IPR001841 -
Pste5g02619 361 MobiDBLite consensus disorder prediction 1 20 - -
Pste5g02619 361 MobiDBLite consensus disorder prediction 1 17 - -
Pste5g02619 361 Coils Coil 238 258 - -
Pste5g02619 361 MobiDBLite consensus disorder prediction 167 234 - -
Pste5g02619 361 SUPERFAMILY RING/U-box 312 357 - -
Pste5g02619 361 SMART ring_2 313 350 IPR001841 -
Pste5g02619 361 MobiDBLite consensus disorder prediction 285 304 - -
Pste5g02619 361 MobiDBLite consensus disorder prediction 167 200 - -
Pste5g02619 361 CDD RING-HC 311 350 - -
Pste5g02619 361 PANTHER OS01G0917900 PROTEIN 20 361 - -
Pste5g02619 361 Pfam Zinc finger, C3HC4 type (RING finger) 311 354 - -
Pste5g02619 361 MobiDBLite consensus disorder prediction 283 304 - -
Pste5g02619 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 361 IPR013083 -
Pste5g02619 361 MobiDBLite consensus disorder prediction 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02619 Pste-Chr5 18517788 18520147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02619 19 361 C3H Transcription Factor Family AT3G07120 37.270 2.10e-58 191