Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02614 ATGGAGGAACATTCTTCATCTGCAACAGAGAATCGAGAGGAGTTTGGGAAGTTGCAGTTCGGATGCGAGCACTATAAGAGACGATGCAAAATTCGAGCACCATGCTGCAATCAGATATTTCCCTGTCGTCACTGTCACAACAACACCGTGAACTCATCTAGCAACGCCGCGGATCATCATGAACTTGTTAGACGGGATGTTAAGCAAGTTATATGCTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGAAGTGTTCAAATTGTGGCGTCAACATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATGTAGACATTGTAATTTGCTGCCATGTAATTTTTTTTTTATCGGTGCAGACAGATAAAGGACAGTTTCATTGTGATGAATGTGATATTTGCAGGGTTGGCGGTCGTGATAAGTTCTTTCACTGTAAGAAATGTGGCTCATGCTATTCAGTGAGCTTGCAAAACAACCACTCATGTGTAGAGAATTCAATGAAGAGTTTCTGCCCTGTCTGTTTTGAGTACTTATTTGATTCAATAAAAGGCAGCTGCATTTTAAAGTGTGGACACACAATGCATGCAGAATGCTATCAAGAGATGACAACTCAAAATCATTATCGCTGTCCTATATGCTTGAAGACAATAGTCGATGATATGTCTGAGAACTGGGAATATCTAGATCGAGAGATTGAAGGTGTTCATATGCCTGAGGAGTACAAGTTTGAGTTTGGAAGGGAGTGTATGAAGAAATTTGTCAAAATAGTTACTTATGCGCAATTGTTTCTGGTTTCTAATTGGGTTGTTTGGGTATTTGACAGGTTACAATTCTATGCAATGATTGTAACTCTACCAGCACAGTTTCTTTTCACATATTTGGTCACAAATGCAGACACTGCAGTTCGTATAACACCCGTAGGATTTCGACACCCAATCATCAATAAA 954 0.3973 MEEHSSSATENREEFGKLQFGCEHYKRRCKIRAPCCNQIFPCRHCHNNTVNSSSNAADHHELVRRDVKQVICSVCDTEQEVAKKCSNCGVNMGEYYCEICKFYDDDVDIVICCHVIFFLSVQTDKGQFHCDECDICRVGGRDKFFHCKKCGSCYSVSLQNNHSCVENSMKSFCPVCFEYLFDSIKGSCILKCGHTMHAECYQEMTTQNHYRCPICLKTIVDDMSENWEYLDREIEGVHMPEEYKFEFGRECMKKFVKIVTYAQLFLVSNWVVWVFDRLQFYAMIVTLPAQFLFTYLVTNADTAVRITPVGFRHPIINK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02614 318 SMART ring_2 173 215 IPR001841 -
Pste5g02614 318 ProSiteProfiles Zinc finger CTCHY-type profile. 92 172 IPR017921 -
Pste5g02614 318 SUPERFAMILY RING/U-box 172 223 - -
Pste5g02614 318 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 4 246 - -
Pste5g02614 318 Pfam CHY zinc finger 22 102 IPR008913 GO:0008270
Pste5g02614 318 CDD RING-H2_Pirh2-like 173 215 - -
Pste5g02614 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 260 IPR013083 -
Pste5g02614 318 ProSiteProfiles Zinc finger CHY-type profile. 15 90 IPR008913 GO:0008270
Pste5g02614 318 SUPERFAMILY CHY zinc finger-like 19 91 IPR037274 GO:0008270
Pste5g02614 318 ProSiteProfiles Zinc finger RING-type profile. 173 215 IPR001841 -
Pste5g02614 318 SUPERFAMILY Zinc hairpin stack 93 166 IPR037275 -
Pste5g02614 318 Pfam Ring finger domain 173 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02614 Pste-Chr5 18448110 18452404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02614 20 244 C2H2 Transcription Factor Family AT3G18290 38.528 3.80e-42 154