Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02613 ATGAATATGAATATCCATCGATCCTTATAAGCACAACAACTCTTGTCTTCTCTCAAATCACTTCCAAATTCTTCTCACTCCACTCAAAAGGGATGACCGGTGAAGCGCGATCCTGCGATTACTGTGGCCACAGCACAGCACTTGTTTATTGCAGAGCCGATTCGGCCAAACTCTGTTTCTCCTGCGATCGCGAGGTTCACTCCACCAACCAGCTCTTCTCCAAGCACACTCGTACGCTGCTCTGCGACGCATGCGATGACTCCCCTGCCACCATACTCTGTTCCACCGAGGCCTCTGTTCTGTGTCAGAATTGTGACTGGGAAAAGCACAACCCTGCGCTCTCTGATTCCCTTCACGAACGAAGGCCTCTCGAAGGCTTCACCGGCTGCCCTTCCGTCTCCGAACTCTTATCCTTCCTGGGGTGTCCCGATATCGGCAAAAAATCTCTGCTTTCTTCGCCTCACCAAAGTGGCCCTGATGGGTTCCTCGGTGAGGAGATTCAAGGCCTTTCGGACTTGTTTGTTTGGGATGCTCCTTCTGTTGTTACGCTTGATGATTTGATTTCTTCTTCTGCTTCTTCTCATACCTTTCAGGCCATGCAGGTTCCTCCTCTGCCCAAGAATCGGAAGGCTGCTTGTGGGAAATACAAAGAAGAGATTCTTAGTCAGCTTCGTGAATTGGCCAAGTCTGAGCCTTTGGATCTTGAACAGTGTGTGCAATCAGGGAACTTGGCTTCTGGTATTGAACGGGACATGGAGGCCGATATCTTTCCTTTTCATGAGGTAAAGCTTCTCCTTCGTTTGTTTTGTACTTGTGTTTTCGTACCAGTTACCAATGTTGGTGCGGATGCCAGAAGATGGTGGCATAGAGAAATCTGTGAGCCTATGTATCAAGTTGTTCCTCCTAACCCGTCGATGAGAACTTATACTGAAGAAGTTCCAGTTAAACATTCTACCTCTGCTGTTGGGGAAACTCACAACGTCGGTGACGATGGAGGGAAACCTTCCATTTCTGTTAAGTCTGAAACCCTATCAACCACTCCCAAAGCTGCAGCATGTGAATTAACAAGCCAAGAGAGAGATTCTGCATTATTACGGTACAAGCAGAAGAAGAAAACAAGGAGATATGACAAGCACATAAGGTATGAATCGAGAAAAGTTCGGGCAGAAAGCAGGGTAAGAGTCAAGGGCCGATTTGCCAAGATGGAACAGGAACACTGAAATCATGGTAGGCTGCTATGACATCATAACTATAATTCCCAGCTCAAATCATATATATTATGTAATGTATCCCTTGTATAGCGAACTTGACTAGATTTTGCAAGTGATATATCCTTGGATCCGCAGCTAGGATATTATGCAGACATATTCTTGCAATATAGTTGACAGCAGGTTTTTATCTCCCCTTGGCACCATAATTGACTGCACCTGAATTAGACAAATAGTTGCAGTCTTCCTGTAAATCCGAACCAAAGTTACTTGGATCTTTAACCTTGGATTGTGTTTGGAGTGTATCTCGTGGACTTAGATTATTGTCATCTTGATTCTCTAGTAATAGTAATAATAACTACAAGAAAATTCAACTTGAGATAGCTTGTGGACCTCCTTAATATTGGTTTGAACAAATGTTGAACATTCTCCATGGGAGCAAGGAAAAGCAAGTCATACTTATATGAGAGAACATGAAGGTTGAGGTATAACACAGCATAGGAAGTGCTAGCTGAGGATTTGTGACAAAACAACATGTTGTATTTTCTGCAATTTCATTGTTTGTTGTTTTGATGAGGGGAATATGTCACTGAATCTGAACTCAGCTGAGTCTGCATGTTTTTTTTTCCCCTTATTAAACTTCTCTTTATCTGAATATTTTCTTTCAAGTAGTTCAAGAACAATAAACACTGGTTAGTGCTGACTCAGCAAAAGTTGGCAAATAAAAGTGTTAAAGTGCACAGAAAAGGGATACAAACTTTCTTATTTATGAGACTAATTGTGCGATAAATACTGATGTGTTGAGGATCAGCATTATAATCTGTTCTGTTCTTCATGTATATTGCCGAGTCATGCAAATTCAGTCGTCATTTATTCCGTTGGTATCTGTTTGAATGTAATGCATGGAAGGCAATCCTTGTATTAATGGACCCTCATGATAACATTCATATTTTTTATACTTGTTCTGTTTTCTTATAAATCTGATCATTAGTATTTTTACTTAAAGTATTAATTCGTGTTCGACAGATATGATTAGCATTTGAAGTATATATGGGGCCGAAAAGATAAATTGGAATAGGAGCATTTTACTTGCTAACGCATTCTTCTGTATTTGTTTTAGAAACAGTAGCTTGGACAATGATTACGATCCAGCAAAATATAAACTTGTACAAGTTTTTTGTTGTCCCCATTACACTAGGAATGATTAAACGATGTAGAGATGTAGAGTTGTAGAGTGTCAATTGTAGACATTCCTTGGAGATGAAAGTGTGAGA 2482 0.4098 MTGEARSCDYCGHSTALVYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTEASVLCQNCDWEKHNPALSDSLHERRPLEGFTGCPSVSELLSFLGCPDIGKKSLLSSPHQSGPDGFLGEEIQGLSDLFVWDAPSVVTLDDLISSSASSHTFQAMQVPPLPKNRKAACGKYKEEILSQLRELAKSEPLDLEQCVQSGNLASGIERDMEADIFPFHEVKLLLRLFCTCVFVPVTNVGADARRWWHREICEPMYQVVPPNPSMRTYTEEVPVKHSTSAVGETHNVGDDGGKPSISVKSETLSTTPKAAACELTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEQEH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02613 375 Pfam CCT motif 329 371 IPR010402 GO:0005515
Pste5g02613 375 SMART bboxneu5 51 93 IPR000315 GO:0008270
Pste5g02613 375 SMART bboxneu5 3 50 IPR000315 GO:0008270
Pste5g02613 375 ProSiteProfiles Zinc finger B-box type profile. 46 93 IPR000315 GO:0008270
Pste5g02613 375 CDD Bbox1_BBX-like 8 50 - -
Pste5g02613 375 ProSiteProfiles CCT domain profile. 329 371 IPR010402 GO:0005515
Pste5g02613 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 372 - -
Pste5g02613 375 CDD Bbox1_BBX-like 50 93 - -
Pste5g02613 375 Pfam B-box zinc finger 50 93 IPR000315 GO:0008270
Pste5g02613 375 ProSiteProfiles Zinc finger B-box type profile. 3 50 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02613 Pste-Chr5 18430613 18435135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02613 6 344 C2C2-CO-like Transcription Factor Family AT2G47890 41.108 2.75e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pste5g02613 zf-B_box 2.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02613 5 18430613 18435135 Pste5g02613 5 18430613 18435135 ECH
Pste5g02613 5 18430613 18435135 Pste4g01812 4 13506384 13509367 PCT