Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02582 ATGTGATGAGAGATGATTTGTATACTGAACTGTGGCGTGCATGTGCTGGAAATTCGGTTTATGTTCCTCGCGTTGGAGAGAAGGTTTTCTACTTCCCGCAAGGCCACTTGGAGCAGGCCGAAACTTACACAGATGAGGTTTATGCTCAACTTACATTAGTTCCGATTCCGGAGCCGGAGTCAAAGGATCTTAATTTAGAGGACGAAGACAATGGTCAGATATCTCGCAGGAATACAATGTACTCCTTTAGTAAGATACTCACTCCATCAGACACAAGTACACATGGTGGATTATCTATTCCGAAGAGACATGCCGATGAATGCTTCCGTCCTCTGGACATGACTCATCAAACACCATCCCAGGAAATTGTTGCGAAGGACTTGCATGGACTTGAGTGGCATTTTCGGCACATATATCGCGGTCAGCCAAAACGACACTTGCTTACTAGCGGTTGGAGCACATTTGTGAATTCAAAGAAACTAATTGCTGGGGATTCATGCATTTTCGTTGGTGATGAATACGGAGAACTCCGTGTTGGGATTCGTCGGGCAATGAAACATCACACCAATGCATCCCCATCTTCGTCACTGATATCGGGTCACAGCATGCAACTTGGAATTTTGGCTAGTGCAAGACATGCTGTTGCCACAGGAACCATATATGCAGGTACGATAATTGGTAAAGAAGTTATTGACAACGTTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGAAATGGGATTCCATACTAGATGTCTACATGCATCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAATCTGCCAAGGAGAAGCACGATCCGGTTCCCCCCCCCGCAAAAAGGTTACATGTACTTAACCAGCGCCCTTCACCTGGATTAAGTGGAATTACCATGGATGGTCAGTGC 917 0.4602 MRDDLYTELWRACAGNSVYVPRVGEKVFYFPQGHLEQAETYTDEVYAQLTLVPIPEPESKDLNLEDEDNGQISRRNTMYSFSKILTPSDTSTHGGLSIPKRHADECFRPLDMTHQTPSQEIVAKDLHGLEWHFRHIYRGQPKRHLLTSGWSTFVNSKKLIAGDSCIFVGDEYGELRVGIRRAMKHHTNASPSSSLISGHSMQLGILASARHAVATGTIYAGTIIGKEVIDNVRWPGSEWRCLKVKWDSILDVYMHPERVCPWWIEPLESAKEKHDPVPPPAKRLHVLNQRPSPGLSGITMDGQC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02582 304 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 219 283 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste5g02582 304 SMART B3_2 81 183 IPR003340 GO:0003677
Pste5g02582 304 ProSiteProfiles B3 DNA-binding domain profile. 81 183 IPR003340 GO:0003677
Pste5g02582 304 Pfam B3 DNA binding domain 81 182 IPR003340 GO:0003677
Pste5g02582 304 Gene3D - 179 273 - -
Pste5g02582 304 CDD B3_DNA 80 181 IPR003340 GO:0003677
Pste5g02582 304 Gene3D - 78 178 IPR015300 -
Pste5g02582 304 FunFam Auxin response factor 79 183 - -
Pste5g02582 304 SUPERFAMILY DNA-binding pseudobarrel domain 74 211 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02582 Pste-Chr5 18203064 18213222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02582 5 302 B3 DNA Binding Superfamily AT5G62000 43.799 1.49e-88 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste5g02582 B3 6.5e-25 CL0405