Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02574 AAATAGTATTATTGAATGGAAGGAATTGAATTTGAAGATCCAAGTGGAAGTTAGGCATCTGGGTTGGGGTGCTAAAGCTAAAAATAGTTAGGCTTATTCATAGGGGAATCGAAATCTGAAATCTGAAATCTGAGAGAAGAGAGGACATTGAGTGGTAATGGCGGAAGCAAAGGAAGAGAGTAAATCTAGCGAGGAGAGCGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCAGAACTGCTTGCAATGTTCAAGGAGTTCGCGGTGGTGGACGAGGTCAACATAATCAAGGACAAAGCCACTCGTGCTTCCCGAGGTTGTTGCTTCCTCATTTGTCCCTCCAGAGACGAGGCTGATAAGGCCGTCAATGCTTGTCACAACAAGAAGACGCTACCCGGGGCATCTAGTCCATTGCAAGTGAAATATGCAGATGGTGAATTGGAAAGATTAGAGCACAAACTTTTCATTGGCATGCTTCCAAAAAATATTTCTGAAGTTGAAATATCTGCACTTTTCTCCAACTATGGAACTATAAAGGATTTACAGATTTTACGAGGCTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCTCTTGCTGCTCTGGAGGCAATCAATGGAAAGCATAAAATGGAGTATTTTGGACCTTCAAGCGGCGTTCAGCCACAAAATTCTGTTGGTGAGGGACGCGAACATTTAATCATGCTCGAACTGGATCCAAGCTTGGAAAGAGGACCTCAAGCCATGGCTTGTGATGCTCATTATGTTTGCAATAAAGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCCCAGTCCCAGGCTTCTAATGTACCACATACTGATTCCCAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCACCTGGAGGATATGGGATAATGCCCTACCGAATGCCACCAATGCAGAGTCAACATGGTTTCCATAATATGATGCCTCACATGAATCAAGGAAATGCATTACGGCCTGATCTTGGCCCCACTATGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTATGTTGGTTCTTATCCTGCCGTGCCAGGTCTACAACATCCTATGGCATATACAGGAATGTTTAGTCCAAGACCGATGAATACTTCTCCGGGTTCTGTTTCACCTGCTGGTGGAAATAACAATAACTCTGCTGCGTCTTCAGGCGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGGACCACCTGGGGCCAACCTATTTATTTATCACATACCACAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGATTTGTTAGTTATGATTCCCCAGAGGCTGCTCAATCTGCAATCAATATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCCTACTGATGAAGCTGAACAATGGAATTTTGTACAATTCACATTGTAATTCATGACGCATGATGTTAATACAATTTGTAATTTTCTGTAACATGAAAGTTCAATTAGACATTGATTATTAATTTATTGATTTTTCCATCACAATGCCTCTGGATTGTACCATCCTTATAGTTTCACCAAGGTCCAGGATTAGAGGATAGCGTTTTGTTTGGCTCCCGTAGACAGTAACTAAGTTTCCGGATGTAGCAGCATCATTTTCTTCAGTGTACAATTCCACATGTAGTGAGGAAATTTTTGTTACCCCAGCCATTCAGTCCCCATTGTATAACAAATTCTCAGCAACGTTGATGTATTCTCAAAGTAAATCATTTAATTTAAATAAAACGTAACAAGTTGCAC 1984 0.4153 MAEAKEESKSSEESVKLFVGQVPKHMTEPELLAMFKEFAVVDEVNIIKDKATRASRGCCFLICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEISALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEYFGPSSGVQPQNSVGEGREHLIMLELDPSLERGPQAMACDAHYVCNKGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHPSLFGALPMSYVPPYNGYGYQAPGGYGIMPYRMPPMQSQHGFHNMMPHMNQGNALRPDLGPTMNPRNYHVPPASYVGSYPAVPGLQHPMAYTGMFSPRPMNTSPGSVSPAGGNNNNSAASSGASKNSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKIFVDKATGVSKCFGFVSYDSPEAAQSAINMMNGCQLGGKKLKVQLKRDNKQGKPY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02574 478 PANTHER RNA BINDING PROTEIN 14 471 - -
Pste5g02574 478 SUPERFAMILY RNA-binding domain, RBD 101 167 IPR035979 GO:0003676
Pste5g02574 478 SMART rrm1_1 16 92 IPR000504 GO:0003723
Pste5g02574 478 SMART rrm1_1 104 172 IPR000504 GO:0003723
Pste5g02574 478 SMART rrm1_1 394 467 IPR000504 GO:0003723
Pste5g02574 478 MobiDBLite consensus disorder prediction 240 255 - -
Pste5g02574 478 SUPERFAMILY RNA-binding domain, RBD 13 473 IPR035979 GO:0003676
Pste5g02574 478 CDD RRM3_CELF1-6 395 467 - -
Pste5g02574 478 MobiDBLite consensus disorder prediction 232 257 - -
Pste5g02574 478 Gene3D - 2 99 IPR012677 -
Pste5g02574 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Pste5g02574 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 395 465 IPR000504 GO:0003723
Pste5g02574 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 166 IPR000504 GO:0003723
Pste5g02574 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 393 471 IPR000504 GO:0003723
Pste5g02574 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Pste5g02574 478 CDD RRM1_2_CELF1-6_like 16 92 - -
Pste5g02574 478 FunFam RNA-binding protein BRN1 2 99 - -
Pste5g02574 478 FunFam RNA-binding protein BRN1 359 470 - -
Pste5g02574 478 Gene3D - 100 239 IPR012677 -
Pste5g02574 478 MobiDBLite consensus disorder prediction 351 388 - -
Pste5g02574 478 Gene3D - 362 470 IPR012677 -
Pste5g02574 478 MobiDBLite consensus disorder prediction 352 384 - -
Pste5g02574 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02574 Pste-Chr5 18139905 18145454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02574 386 468 Eukaryotic Initiation Factors Gene Family AT1G22760 36.145 7.61e-10 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02574 5 18139905 18145454 Pste5g02574 5 18139905 18145454 ECH
Pste5g02574 5 18139905 18145454 Pste4g01845 4 13700967 13705468 PCT