Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02544 GTTTACCCAATAGCACAAATGGTACGAACCAAACCCTAGACACAAGTTTTTGGTCAGTGTCCACTTGAATCCGTTTCTGCTGCTGCTTTGTTTCTCCTCTTCCAGAGAACACCCCGCGAGTTGCAAAAGCTGTGCGCACAAATTCAACTCTGCTATTATTCTTGTTCTTCTTTCGCGATTGTCTCATCTGAATAATTCTCGGCGTTACTTACAACTTTTGATAACAATGGCTTCAAGATTCTGGACTCAGGTGGAAGTGACTCGGAGGAGGAGGAGAGTGATTATGACGAGGAGGTTGAAACCACCGCAGGTGAATCTGCTAATCAAGCGGTGACAAGCAGGTACTTGCAGGACAATGCAAGTGACAGTGATGATTCGGATGGGCAAAAGCGTGTTGTTCGGTCGGCGAAAGACAAGCGATTTGAGGAGATGGTGTCCACAGTTGACCAGATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAAAAGGTCATGCGTGTCACCGAGTCTGAGAAGGTTCCAAATCTCTACATCAAGGCGCTTGTGATGCTCGAAGATTTTTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGCAGTAGCAATGCCAAGGCCTTGAACTCCATGAAGCAGAAGCTGAAGAAGAATAATAAACAGTACGAGGATTTGATTAATAAGTGCAGGGAGAATCCTGAGAGTGATGATGAAAAGGAAGATGAGGATAGTGAGGATGATTATGAGAATGCTGGTGATGGTCCTTGGGACCAAAAGCTAAGCAAGAAGGACCGTCTCTTGGATAGGCAGTTTATGAAAGACCCTAGTGAGATCACGTGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCTAGGGGCCGTAAGGGTACTGGTCGTTTTGAGCAGGTTGAGCAGCTTACTTTCTTAACGAAGGTTGCTAAGACACCTGCACAGAAGCTGGAAATCCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCGGGGCTCAATGGGCATATGCCCATAAATGTGTGGAAAAAATGTGTGCAGAACATGCTGGTCATCCTTGATATTCTAGTGCAGCATCCAAACATAGTGGTTGATGATTCAGTGGAACCAGATGAGAATGAAACTCAGAAAGGGATTGACTACAATGGAACCATTCGAGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGATGTTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACCCGGGACTATGTTGAGAGGCTCAAGGACGAACCTCTGTTTCTGGTTCTTGCTCAAAACGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCTGCATCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGAGGTTTATGATGCAATGAAAAAGTTGACTGAACTGACAGAGGATGGAGATGATGGAGGGGAGGCAAGCGAGGAGTCAAAAGGGTTTGAGGAATCTAGAATCCCTACTGCATTTGTTGTTACCCCTGAGTACGGAGATGAGAGGACCAAAGCACGTGCAATGCTCTGTGATATATACCACCATGCTCTTCTTGATGAGTTCTCAATTGCTCGTGATCTGCTGCTTATGAGTCATTTGCAAGATAGTGTTCAGCATATGGACATCTCAACGCAGATACTTTTTAACAGGGCCATGTCACAATTAGGTCTATGTGCTTTTCGGGTTGGACTTATTTCTGAAGCTCATGGCTGTCTATCTGAACTATATTCTGGTGGAAGGGTGAAAGAGTTGCTTGCCCAAGGAGTGTCTCAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAAATGCCATATCATATGCACATCAATCTTGAGCTCCTGGAGGCAGTACATCTTGTATCTGCTATGCTGTTGGAAGTTCCTAATATGGCAGCCAATGTTCATGATGCCAAACGCAAGGTCATATCTAAGACTTTCCGTCGCTTGCTTGAGGTGAGTGAGAAACAAACATTCACCGGTCCACCGGAAAATGTCAGAGATCATGTTATGGCCGCCATGAGGGTTCTTAGCAAGGGAGACTTCCAAAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTTAGAAATCAAGACACCGTACTTGAAATGCTGAAGGACAAAATAAAAGAGGAGGAATTGAGGAGATACCTCTACGTTGTCTTCATCTTATGA 2286 0.4418 MVSTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESDDEKEDEDSEDDYENAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQHPNIVVDDSVEPDENETQKGIDYNGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLKDEPLFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMKKLTELTEDGDDGGEASEESKGFEESRIPTAFVVTPEYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAAMRVLSKGDFQKAFDIIVSLDVWKFVRNQDTVLEMLKDKIKEEELRRYLYVVFIL 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02544 618 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 1 618 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pste5g02544 618 MobiDBLite consensus disorder prediction 107 122 - -
Pste5g02544 618 MobiDBLite consensus disorder prediction 99 130 - -
Pste5g02544 618 Coils Coil 76 103 - -
Pste5g02544 618 ProSiteProfiles PCI domain profile. 497 618 IPR000717 -
Pste5g02544 618 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 120 529 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pste5g02544 618 MobiDBLite consensus disorder prediction 67 85 - -
Pste5g02544 618 MobiDBLite consensus disorder prediction 66 85 - -
Pste5g02544 618 Coils Coil 589 609 - -
Pste5g02544 618 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 613 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02544 Pste-Chr5 17896004 17899255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02544 1 614 Eukaryotic Initiation Factors Gene Family AT3G56150 70.376 0.0 913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02544 5 17896004 17899255 Pste7g02110 7 19360472 19362116 ECH
Pste5g02544 5 17896004 17899255 Pste5g02544 5 17896004 17899255 ECH