Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02543 CCTCTTTTCCCCTTTGCTTTGCTTTTTATTTACCAATTCAATTTCCCTTTTCACACCAAACCCCTGCCCCCTCTCTCATTTTGATCACTCCATTCCACCCTCTAATGTAACCATTTTATTTTAGGGACACCCTCACACACATAACATTCATTATCCAACTTTTGGCTTCACCTCCTCACACACCCTCCTTTTTTTTGGGCTTTTGCTTCATCTGTTTGTTGATGGAAAACCAATTCTTTCTCAATGCTGGTGTGGCCCCTCAGCTGCATTTTGAGCCTTCACCTCATCATCCTTGTCCACCCTCTTGGCAATCACTGTCTTCTGCTATGGATGTTCAAGTCACGGTTTTGAATTGCTCAAATGAACTGACTCAGGATTGCTTCTACACCCCAACATGGGATAAGTCAACGGATCATGGTATTCAGTTTGATTCTGCACTGAGTTCTATGGTGTCTTCTCCTGCAGCTTCCAATTCCAACATGTCAAGTGAGAATTTTGTCATCAGGGAATTGATTGGAAAATTGGGAAACATTGGTGGTGGTGAGATCTCACCTCATTCTCAGCCTTTGGTTGGTGCGTCTTCCTACATCAATGGGAATAACAGCACCAACACTTCATGTTATAGCACCCCTTTGAGTTCTCCTCCAAAGGTCAACATGAACAAGATCCCCACAATGGTGAAACACTTGGTGAAAGAGGGCATGCCCCCCAGTTTGGGGACATCAATGTCCTTGAATTCTAGTGTGGCAGAACTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGACTCAACAATGCTGAATTGACTCAGAGATCTTCTCCATTGGCTGAAAATGGGAACCTCCCTAGAGTCTCAAGTAGTCCATCTCTCAATGTTCTTGGATCTCAAATTGGTACTCAGGAGAACAAGAATTCTCCTTTGCAGGACCTAATGGAAGTGACCAATTCCCAAGAGGAATCTACTATCTCTGAACAAACCCCAAATGTGGACACTGGGGTGAAACCTTCCCCTTATGTGAATTCTAGAAAAAGAAAAGGTCCATCCAAAGGAAAAGCTAAGGAAACTTCAACATCTACCAACCGCCCTATGGCTGCTGAAGCTAGTGAAGACTCAAATGCAAAGCGCAGCAAGTCGAATGAAGGTGAGGGGAATGAAAATGGCCAAGTGAAGGAAGAGGAAGAGTCCAAAGGGGATACTAGCAATGCAAATGATGATAAACAGAACAAGAGTAACTCAAAACCTCCTGAGCCTCCAAAGGATTATATTCATGTTAGAGCTAGAAGAGGTCAAGCTACTGATAGTCATAGTCTTGCAGAAAGAGTTCGGAGAGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTGGTCCCTGGTTGCAATAAGGTCACAGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTGTTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCAATAGATTCCTCAGCACCAGCCTTTTATGGGCAACACCCTCAGCCAAACCCAGCAATCCACAATAACATTCCTAATGGAACTGTGACCCACACCTCAGTGGACCCATTAGATGCTACTACTGCTCTGTGCCAAAACCTTGGCATGCATTTACCTCATCTAAATGGGTTTAATGAAGGTAGCTCTCAGTATCCAATAACATTCTCTGAAGATGACCTCCACACCATTGTCCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAATACAATCTCAGAGTTTCAATGGCTCAAATCAAGTACCCCTATGAAGGTTAATCTCTGATCACCATTCATTACGCCTGAATTGAAGCTCAGAAGCATAGGAAGACTTCTGCTGTACACAACAAGAAGAGATTTAATTTGAACCACCCCTTGAATTATTAAGCCATTATTATCAACCACTAGGTCTAATAGAACCCTCTTTTGTCCTTATGCTAGCCGTTTCTTTTCTTACCCTTTTCATGATTTTAATTTTTAATCTTCAGGGGCAGTTCTTTTCATTTTTTTTTACAACTTATTCACTGTAAAATCTTTAGGACCGATTCTGTATTCTCTTGGTGCAAATTCTTATTATTGCCGCACCAATTGTAAGATATAGTGCTAATTAAAGGAGTTTTTCTACTACCCGC 2297 0.4192 MENQFFLNAGVAPQLHFEPSPHHPCPPSWQSLSSAMDVQVTVLNCSNELTQDCFYTPTWDKSTDHGIQFDSALSSMVSSPAASNSNMSSENFVIRELIGKLGNIGGGEISPHSQPLVGASSYINGNNSTNTSCYSTPLSSPPKVNMNKIPTMVKHLVKEGMPPSLGTSMSLNSSVAELSADPGFAERAAKFSCFGSRSFNGRTTQLGLNNAELTQRSSPLAENGNLPRVSSSPSLNVLGSQIGTQENKNSPLQDLMEVTNSQEESTISEQTPNVDTGVKPSPYVNSRKRKGPSKGKAKETSTSTNRPMAAEASEDSNAKRSKSNEGEGNENGQVKEEEESKGDTSNANDDKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSVESLISKDIFQSNNSLAHPIFPIDSSAPAFYGQHPQPNPAIHNNIPNGTVTHTSVDPLDATTALCQNLGMHLPHLNGFNEGSSQYPITFSEDDLHTIVQMGFGQTANRKTPIQSQSFNGSNQVPL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02543 571 MobiDBLite consensus disorder prediction 216 280 - -
Pste5g02543 571 Pfam Helix-loop-helix DNA-binding domain 379 426 IPR011598 GO:0046983
Pste5g02543 571 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 269 479 IPR024097 GO:0006355
Pste5g02543 571 SMART finulus 381 431 IPR011598 GO:0046983
Pste5g02543 571 Coils Coil 422 442 - -
Pste5g02543 571 Gene3D - 372 447 IPR036638 GO:0046983
Pste5g02543 571 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 375 425 IPR011598 GO:0046983
Pste5g02543 571 MobiDBLite consensus disorder prediction 297 311 - -
Pste5g02543 571 MobiDBLite consensus disorder prediction 313 366 - -
Pste5g02543 571 CDD bHLH_AtBPE_like 365 450 - -
Pste5g02543 571 MobiDBLite consensus disorder prediction 551 571 - -
Pste5g02543 571 MobiDBLite consensus disorder prediction 216 366 - -
Pste5g02543 571 FunFam Basic helix-loop-helix transcription factor 372 444 - -
Pste5g02543 571 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 373 444 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02543 Pste-Chr5 17889199 17892165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02543 1 537 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.059 2.93e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g02543 HLH 4.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02543 5 17889199 17892165 Pste6g00919 6 3602037 3605823 PCT