Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02529 CCCAATAGCCCAAATGCTACAAACCAAACCCTAGACACAAGTTTTTGGTCAGTGTCCACTTGAATCCGTTTCTGCTGCTGCTTTGTTTCTCCTCTTCCAGAGAACACCCCGCGAGTTGCAAAAGCTGTGCGCACAAATTCAACTCTGCTATTATTCTTGTTCTTCTTTCACGATTGTCTCATCTGAATAATTCTCGGCGTTACTTACAACTTTTGATAACAATGGCTTCAAGATTCTGGACTCAGGGTGGAAGTGACTCGGAGGAGGAGGAGAGTGATTATGACGAGGAGGTTGAAACCACCGCAGGTGAATCTGCTAATCAAGCGGTGACAAGCAGGTACTTGCAGGACAATGCAAGTGACAGTGATGATTCGGATGGGCAAAAGCGTGTTGTTCGGTCGGCGAAAGACAAGCGATTTGAGGAGATGGTGTCCACAGTTGACCAGATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAAAAGGTCATGCGTGTCACCGAGTCTGAGAAGGTTCCAAATCTCTACATCAAGGCGCTTGTGATGCTCGAAGATTTTTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGCAGTAGCAATGCCAAGGCCTTGAACTCCATGAAGCAGAAGCTGAAGAAGAATAATAAACAGTACGAGGATTTGATTAATAAGTGCAGGGAGAATCCTGAGAGTGATGATGAAAAGGAAGATGAGGATAGTGAGGATGATTATGAGAGTGATGATGAAATTATTGACCCAGAGCAGCTTCGGAAACCAGAAGCAAAATCTGATTCAGAAGCCTCTCAGTATGACGATGAAAAACCAGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACCGTCTCTTGGATAGGCAGTTTATGAAAGACCCTAGTGAGATCACGTGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCTAGGGGCCGTAAGGGTACTGGTCGTTTTGAGCAGGTTGAGCAGCTTACTTTCTTAACGAAGGTTGCTAAGACACCTGCACAGAAGCTGGAAATCCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGGCTCAATGGGCATATGCCCATAAATGTGTGGAAAAATAACATGCTGGTCATCCTTGATATTCTAGTGCAGCATCCAAACATAGTGGTTGATGATTCAGTGGAACCAGATGAGAATGAAACTCAGAAAGGATTGACTACAATGGAACCATTCGAGTTTGGGAGCTTGCAGTGCATAGATCCTCATACCCGGGACTATGTTGAGAGGCTCAAGGACGAACCTCTGTTTCTGGTTCTTGCTCAAAACGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCTGCATCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGAGGTTTATGATGCAATGAAAAAGTTGACTGAACTGACAGAGGATGGAGATGATGGAGGGGAGGCAAGCGAGGAGTCAAAAGGGTTTGAGGAATCTAGAATCCCTACTGCATTTGTTGTTACCCCGGAGGTTGTTGCCCGAAAACCCACCTTCCCAGAGAAGAGCAGGACCGTAATGGATGTATTGGTATCACTGATATACAAGTACGGAGATGAGAGGACCAAAGCACGTGCAATGCTCTGTGATATATACCACCATGCTCTTCTTGATGAGTTCTCAATTGCTCGTGATCTGCTGCTTATGAGTCATTTGCAAGATAGTGTTCAGCATATGGACATCTCAACGCAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGACTTATTTCTGAAGCTCATGGCTGTCTATCTGAACTATATTCTGGTGGAAGGGTGAAAGAGTTGCTTGCCCAAGGAGTGTCTCAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAAATGCCATATCATATGCACATCAATCTTGAGCTCCTGGAGGCAGTACATCTTGTATCTGCTATGCTGTTGGAAGTTCCTAATATGGCAGCCAATATTCATGATGCCAAACGGAAGGTCTTATCTAAGACTTTCCGTCGCTTGCTTGAGGTGAGTGAGAAACAAACATTCACTGGTCCGCCGGAAAATGTCAGAGATCATGTTATGGCAGCGACAAGGGTTCTTAGCAAGGGAGACTTCCAAAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTTAGAAATCAAGACACCGTACTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATTCCTCTTTACCTTTTCCTCATCTTATGAATCCTTGAGTCTTGATCAGCTCACCAAAATTTTTTATCTTTCTATCACTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAACTTCATGCGAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAGACGTTGAACACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACAGAGAAATTATCCATCCTTGCAGAGAGTAATGAAAGAGCTACAGAGGCAAGGATAGGCGGTGGTGGATTGGATCTGCCTTTAAGGAGGAGAGATGGCCAGGACTACGCTGCTGCTGCCGCCGGTGGTAGTGGAACAGCCTCTTCTGGTGGTAGATGGCAAGACCTGTCTCTTTCTCAACCAAGGCAAAGCAGTGGACGTGCAGGATATGGTAGCGGTGGTGGAAGGCCAATGGCATTAGGCCAAGCAGCCGGCAGTGGCTATTCAAGGGATCGAACAGGGCGAGGAACAGGTGCTGGCTATCAGAGTGGAAGATATCAAGGGGGTTCAGCATTGAGGGGACCCCATGGCGATCTATCTACACGCATGGTTAGCCTCAAGGGTGTTCGCACT 2963 0.4576 MASRFWTQGGSDSEEEESDYDEEVETTAGESANQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMVSTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESDDEKEDEDSEDDYESDDEIIDPEQLRKPEAKSDSEASQYDDEKPDAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKNNMLVILDILVQHPNIVVDDSVEPDENETQKGLTTMEPFEFGSLQCIDPHTRDYVERLKDEPLFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMKKLTELTEDGDDGGEASEESKGFEESRIPTAFVVTPEVVARKPTFPEKSRTVMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANIHDAKRKVLSKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLSKGDFQKAFDIIVSLDVWKFVRNQDTVLEMLKDKIKEEALRTFLFTFSSSYESLSLDQLTKIFYLSITRTHSIVSRMMINEELHASWDQPTGCIVFQDVEHSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGGSGTASSGGRWQDLSLSQPRQSSGRAGYGSGGGRPMALGQAAGSGYSRDRTGRGTGAGYQSGRYQGGSALRGPHGDLSTRMVSLKGVRT 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02529 914 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 633 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pste5g02529 914 ProSiteProfiles PCI domain profile. 601 773 IPR000717 -
Pste5g02529 914 Coils Coil 144 171 - -
Pste5g02529 914 MobiDBLite consensus disorder prediction 134 155 - -
Pste5g02529 914 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 849 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pste5g02529 914 MobiDBLite consensus disorder prediction 167 231 - -
Pste5g02529 914 Pfam PCI domain 641 769 IPR000717 -
Pste5g02529 914 MobiDBLite consensus disorder prediction 27 44 - -
Pste5g02529 914 MobiDBLite consensus disorder prediction 820 914 - -
Pste5g02529 914 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 908 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pste5g02529 914 MobiDBLite consensus disorder prediction 194 231 - -
Pste5g02529 914 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 702 790 IPR000717 -
Pste5g02529 914 MobiDBLite consensus disorder prediction 175 193 - -
Pste5g02529 914 MobiDBLite consensus disorder prediction 135 154 - -
Pste5g02529 914 MobiDBLite consensus disorder prediction 12 26 - -
Pste5g02529 914 MobiDBLite consensus disorder prediction 830 850 - -
Pste5g02529 914 MobiDBLite consensus disorder prediction 1 62 - -
Pste5g02529 914 SUPERFAMILY "Winged helix" DNA-binding domain 697 772 IPR036390 -
Pste5g02529 914 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02529 Pste-Chr5 17788578 17792477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02529 1 914 Eukaryotic Initiation Factors Gene Family AT3G56150 66.208 0.0 1126