Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02528 TGAGCTTGTGTCTTTATGGTAATGTCCTTGTTTTCCTCTCAACAGTTAAATGTTACTGAGAATAGAAGCCAGCAGAATAATAAAAGCAGCCAAACCGGCACATAGAGAGAGAGAGACTCACTCTCACACACAAATTTTTCTTCGTTTCTTTTCAATACGTAAAGGAGAGAGAAAGAGATGAAACATAGTGCTTCCACTGATATTCCCTGCTTCTCCATTCTCTGAGCCAAAATTTCAATTTTTAATAGATATTAGTTTCTGGGGTGTTGTAAAGTTGAAGGCTTTGAGGTCTGATCCATTGGTATCACCATCATCATCATCATCATAGTCATCACATGGCTAAGCCGGGGGTGTTGGACTCTGATCCAGGGGTGATGGTGAAGAAGGCCTTGGAGTTGAAGAGGGAGCTGCAGAGGTTGGTGAAGTCCATTGTGGATGATGAGGATTGCAGCACTGAGACCATTGATCAGGCCAAAGAGACTCTCTGTGTTCTCAAGGAGTTGAAGCTCAGAAAGAGGTCTTCACTGTCTTTCAAGCTGCACAACAAGAGTGTCACTTCTTGTCCTGATGAATTCAGGTGTCCACTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCGGGTCAGACATATGATAGACCTTTCGTTCAAAAATGGCTAAATGCTGGAAATAGGACTTGCCCTCGCACAAATCAAGTCCTTTCACATACTGTGCTTACACCAAATCACTTAATAAGGGAAATGATAGAACAATGGTCAAAACACCAAGGGATTGAGTTATCAAATAGTGTTCAATATATTGATGAGGAAGGTTTAAATGAAGCAGATCGTGAGCATTTTCTTTGTTTGCTTAAGAAAATGTCTTCAACACTTTCAGATCAGAAGACAGCTGCAAAAGAACTGCGCTTGCTGACAAAGAAGCATCCTTGTTTCCGGGTACTTTTCTGTGATTCTGCAGATGCCATTCCCCAATTGCTCAAGCCAATTTGTGGGAGTGATTCTTTTGGTAGTGTTCACCCTGATCTCCAAGAAGATATAATCACAACACTCCTCAACATATCTATTCATGATAACAACAAAAAGCTAGTGGCTGAAACTCCTATGGTAATTCCTCTCATTATGAGAGCATTGAGATCTGGAACAATTGAAACAAGAAGCAATGCTGCAGCCGCGCTTTTCACCTTGTCAGCACTAGACTCAAACAAGGAACTCATAGGGAAATCAGGTGCCTTAAAGCCATTAATTGACCTCTTGGAAGAAGGGAACCCCTTAGCCATGAAGGATGTTGCTTCAGCAATTTTTAACATATGTGTAATGCATGAGAACAAGGCAAGAGCCGTGAAGGATGGAGCAGTGAAGGTGATTTTGACAAAGATAAAGAATCAGATTCATGTGGATGAATTACTAGCCATCCTTGCACTACTTTCAAGTCACCAGAAGGCTGTCCATGACATGGGAGATCTTGGAGCTGTTCCTGGCTTGCTAAGAATCATCAGAGAGAGCGCGTGTGAACGCAACAAGGAGAATTGTGTAGCTGTCCTTCAAACCATTTGTCTGTATGATAGATCAAAGTTGAAGGAAATTAGAGAAGAGGAGAACAGCCACAAAACAATCTCTGAGCTAGCACAGAATGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGACTGAACAGGGTTGTTAATATCACACACACTGCATAATGTTTCTTGAGCCCTCTCTCAAGGTACATTACATCGTATATTCTGCATCTGTCTCCAGAACTTAAAGTTGTTTAAAATTGAAATCAGTTAGCAATTCTGTCTCTTCACCAATTTTGTACATTCTTTTTTCTTGAAAAGTTATTCTCATGTTTATCAGTTAGTGACTGAATAAAGTCATAAGCTAGTTGCCTCCAAGTTATTCAAAAACTTCTACAGGGTTCCCCATGGATATTTGGGCTTAAAAC 1963 0.4086 MAKPGVLDSDPGVMVKKALELKRELQRLVKSIVDDEDCSTETIDQAKETLCVLKELKLRKRSSLSFKLHNKSVTSCPDEFRCPLSKELMRDPVIVASGQTYDRPFVQKWLNAGNRTCPRTNQVLSHTVLTPNHLIREMIEQWSKHQGIELSNSVQYIDEEGLNEADREHFLCLLKKMSSTLSDQKTAAKELRLLTKKHPCFRVLFCDSADAIPQLLKPICGSDSFGSVHPDLQEDIITTLLNISIHDNNKKLVAETPMVIPLIMRALRSGTIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGNPLAMKDVASAIFNICVMHENKARAVKDGAVKVILTKIKNQIHVDELLAILALLSSHQKAVHDMGDLGAVPGLLRIIRESACERNKENCVAVLQTICLYDRSKLKEIREEENSHKTISELAQNGTSRAKRKASGILERLNRVVNITHTA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02528 460 PANTHER U BOX DOMAIN-CONTAINING 18 450 - -
Pste5g02528 460 FunFam RING-type E3 ubiquitin transferase 355 456 - -
Pste5g02528 460 SMART arm_5 196 245 IPR000225 GO:0005515
Pste5g02528 460 SMART arm_5 288 328 IPR000225 GO:0005515
Pste5g02528 460 SMART arm_5 368 409 IPR000225 GO:0005515
Pste5g02528 460 SMART arm_5 246 287 IPR000225 GO:0005515
Pste5g02528 460 FunFam RING-type E3 ubiquitin transferase 207 352 - -
Pste5g02528 460 SUPERFAMILY ARM repeat 173 450 IPR016024 -
Pste5g02528 460 Gene3D - 356 455 IPR011989 -
Pste5g02528 460 Gene3D - 208 355 IPR011989 -
Pste5g02528 460 FunFam RING-type E3 ubiquitin transferase 75 149 - -
Pste5g02528 460 Pfam Armadillo/beta-catenin-like repeat 290 327 IPR000225 GO:0005515
Pste5g02528 460 CDD RING-Ubox_PUB 77 129 IPR045210 -
Pste5g02528 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 149 IPR013083 -
Pste5g02528 460 SUPERFAMILY RING/U-box 72 149 - -
Pste5g02528 460 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Pste5g02528 460 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Pste5g02528 460 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02528 Pste-Chr5 17764589 17767971 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02528 138 460 U-box Gene Family AT3G07360 60.843 1.88e-131 381