Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02524 TCATCGTATCTCAGCACTTGTAGAACACGAGAAATGGGTCCAAACAACGTAGATTACTTGTCCTCTGTGACCAAACAAGCAGAGAAGCTAAGAATAGACGGCAACAACAATTTCAAGAAAGATCGTTTTGGTGCTGCCATTGATGCTTACACTGAGGCCATTACGTTGTGCCCTGATGTTCCTGTGTATTGGACTAACCGTGCTCTTTGTCATCTCAAGCGAAATGATTGGACAAGAGTAGAGGAAGACTCTCGTCAAGCTATTAAGCTTGACAACAGTTTGATTAAGGCTTTGGATCTCGATAAAGGTGCCCATCCTAAAGGCCAAATGGTAAAGGAAATAAGGCAAGAGCTTGCAAAAGCGAAATACTATGAGTGGGAACATTCATATACTAAGCGATCATGGGAACTGCAGAACTTGAAAGAAGCTTGTGAGTCTGCTTTAAAAGAAAAACATTTTCTTGAACATGTGGAAGAATTTATAGAAGATGATACTGCCCATTTGGAACAATTAGAGGCTTTAGGAAGAGTGTTCAATAAAGTTGCAGAAGATGATATGCCTACTGAGGTGCCAGATTATCTATGTTGTAGAATCACACTTGATATTTTTTGTGATCCTGTCATCACCCCAAGTGGACTTACATATGAGAGAGCAGTGGGTAAATTTGATCCAGTCACTCGAGAACCTCTTGATCCATCACAACTAATACCCAATTTAGCCATAAAAGAAGCAGTTCAAGCATTCTTGGATAAACATGGGTGGGCATACAAAGACATAATAGAAAGAAGTGCCTCCAGTTGA 801 0.4032 SSYLSTCRTREMGPNNVDYLSSVTKQAEKLRIDGNNNFKKDRFGAAIDAYTEAITLCPDVPVYWTNRALCHLKRNDWTRVEEDSRQAIKLDNSLIKALDLDKGAHPKGQMVKEIRQELAKAKYYEWEHSYTKRSWELQNLKEACESALKEKHFLEHVEEFIEDDTAHLEQLEALGRVFNKVAEDDMPTEVPDYLCCRITLDIFCDPVITPSGLTYERAVGKFDPVTREPLDPSQLIPNLAIKEAVQAFLDKHGWAYKDIIERSASS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02524 266 Pfam U-box domain 190 254 IPR003613 GO:0004842|GO:0016567
Pste5g02524 266 Coils Coil 137 157 - -
Pste5g02524 266 ProSiteProfiles U-box domain profile. 189 255 IPR003613 GO:0004842|GO:0016567
Pste5g02524 266 SUPERFAMILY RING/U-box 183 259 - -
Pste5g02524 266 SMART tpr_5 61 94 IPR019734 GO:0005515
Pste5g02524 266 SMART tpr_5 27 60 IPR019734 GO:0005515
Pste5g02524 266 Gene3D Tetratricopeptide repeat domain 4 156 IPR011990 GO:0005515
Pste5g02524 266 SUPERFAMILY TPR-like 26 102 IPR011990 GO:0005515
Pste5g02524 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 258 IPR013083 -
Pste5g02524 266 CDD RING-Ubox_CHIP 190 252 IPR045202 -
Pste5g02524 266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 93 257 IPR045200 GO:0000209|GO:0061630
Pste5g02524 266 SMART Ubox_2 193 248 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02524 Pste-Chr5 17751488 17760199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02524 24 257 U-box Gene Family AT3G07370 57.249 1.35e-102 298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02524 5 17751488 17760199 Pste6g01133 6 4726127 4730520 PCT