Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02522 TGGATATGACTGTGACATTCTGCCCCATTCGTATGATCCTCATGAATTATCTAATCAATAAAAAGTTCAACCCAAAAAGTTCACAGCTTGCTTGCAGATTCTCCTGTTCCCTCGCTTTTGAACAAAGCCCATTTGTTTCATGCGTTAAACATGAAGAAAACTCCACCCCTTTTGTGTTCTTACGTGATTACAAGTTTTCAGGTCGGTGCAGTGTCAGGAACACAAAAATCTTGCATGCCCATTTGCTTAAAACTCGTGATTTACAATCTGATATCTTCTTGATGAACTCCTTGCTTGATCGGTACTGCAAATCTGCTGACATGGTTGTTGCATGCAAGCTGTTTGATACAATTGCTCTTCCAAATCTTGTTTCTTGGAACATCATGGTATCTGGTTGTGACCATAATTCGATGTTTGAGAAGTCACTGGAGATGTTTTGTAGGATGCATGTGCTTGGTGTTGAGCCTGATGAGTTTAGTTATGGGAGTGTTCTTTCGGCCAGTAATGCTTTGCGAGCTCCACTATTTGGCAAGCAAGTTTATTCACTTGTGATGAAAAATGGTTTTCTTTCCAGTGGTTATGTTCAGACTCGAATGATGCATTTGTTTTCCAAAACTTGCGACTTCAAGGAGGCACTAAGGTTTTTCGATGATGCTTCAAGTGACAATGTGGTATGTTGGAATGCTATTATTTCGTTGGCTGTTAAAAGTGGAGAAAGCTGGGTTGCTTTGAATCTGTTTCGTCGAATGTGCCATGCATCTCTAGTGCCGAATAGTTATACATTTCCAAGCATCTTAACAGCATGTTGTGTGCTTAAAGAGTTGCATATTGGGAGAGGAGTTCATGGGTGGGCAATAAAATGTGGTGCAACAGATATCTTTGTGGAGACTACTATTGTTGATTTATATGCGAAATTTGGATGTATCAGTGAAGCTTTTAGACAATTTTCCCAGATGCAAGTCCATAATGTGGTCTCCTGGACTGCTATAATTTCTGGGTTTGTCCAAAAGGATGCTACTATTTTTGCACTAAAGCTTTTCAAAGATATGAGAGCAATAGGGCATGAGATAAATAGCTATACTGTTACTTGTGTACTTTCTGCATGTGCTAATCCTGATATGATTAAAGAGGCAGGTGAAATTCATTCCTTGGTATTAAAATTAGGTTTGAATTTGGATCCTAAGATTGGAGCTGCTATAGTTAACATGTATGCAAAAATAGGAGAAGTTGAACTATCTGAATTAGCCTTCAATGAGATGAAAAATATAAACGATCAGAGCATATGGGCAGCCATGTTGTTTTCTTTTGCTCAGAACCAAAATTCTAGGAGAGCAGTTGAGTTATTCCGTGTAATGTTAGGAGGAGTGAAACCTGATGAGTATTGTGTTAGTAGTGTGCTAAGTATTATTAGCTGCTTAAGTCTAGGGTCACAGATACATGGTTATGCTTTGAAGTCTGGGCTAGTCAGTGATTTTTCGGTAGGATGTTCACTTTTAACGATGTATTCAAAGTGTGGTTGTTTAGAGGAATCTTTTAAAGTTTTTCAGCAAATTCCCGTCAAGGATAATGTCTTGTGGTCCTCCATGATTTCTGGTTTTGTAGAGCATGGGTATGCAGATCTAGCTCTTCAGCTATTTAAAGAAATGCTATATCAAGGAATTATACCTGATAACATTACCTTAGTCTCAATTCTAGCTGCATGTTCTGACCTTTGTTTCTTAAAGACAGGGCTTACACCAAATCACTTAATAAGGGAGATGATAGAACAATGGTCAAAAGACCAAGGGATTGAGTTATCAAATAGTGTTCAATATATTGATGAGGAAGGTTTAAATGAAGCAGATCGCGAGCATTTTCTTTGTTTGCTTAAGAAAATGTCTTCAACACTTTCAGATCAGAAAATAGCTGCAAAAGAACTGCGCTTGCTGACAAAGAAGCATCCTTGTTTCCCGACACCATTCCCCAATCGCTCAAGCCAATTTATGGGAGTGATTCTTTTGGTAGTGGTTAACCCTGATCTCCAAGAAGATATAATCACAACACTCCTCAACATCTCTATTCATGATAACAACAAAAAGCTAGTGGCTGAAACTCCTATGGTAATTCCTCAACTTATGAGAGCATTGAAATCAGGAATAATTGAAACAAGAAGCAACGCTGCAGCCGCACTTTTCACCTTGTCAGCTCTAGACTCAAACAAGGAACTCATAGGGAAATCAGGTGCCTTAAAGCCATTAATTGACCTCTTGGAAGAAGGGCATCCCTTAGCCATGAAGGATCAATTTTTAACATGTGTAATGCATGAGAACAAGGCCAGAGCCGTGAAGGTGATTTTGACAAAGATAAAGAATCAGATTCATGTGGATGAATTACTAGCCATCCTTTCACTTCCTTCAAGTCACCAGAAGGCTGTTCATGACATTGGAGATCTTGGAGCTGTTCCTGGCTTGCTAAGAATCATCAGAGAGCGTGTGCGAACACAACAAGGAGAATGTGTAGCTGTCCTTCAAACCATTTGTCTGTATGATAGATCAAAATGGAAGGAAATAAGAGAAGAGGAGAACAGCCGCAAAACAATCTCTGAGCTAGCACAGAATGGAACATCAAGGGCCAAGAGGAAAGCTAGAGGAATTCTTGAGAGACTGAACAGGGTTGTTAATATCACACACACTGCA 2675 0.3929 MTVTFCPIRMILMNYLINKKFNPKSSQLACRFSCSLAFEQSPFVSCVKHEENSTPFVFLRDYKFSGRCSVRNTKILHAHLLKTRDLQSDIFLMNSLLDRYCKSADMVVACKLFDTIALPNLVSWNIMVSGCDHNSMFEKSLEMFCRMHVLGVEPDEFSYGSVLSASNALRAPLFGKQVYSLVMKNGFLSSGYVQTRMMHLFSKTCDFKEALRFFDDASSDNVVCWNAIISLAVKSGESWVALNLFRRMCHASLVPNSYTFPSILTACCVLKELHIGRGVHGWAIKCGATDIFVETTIVDLYAKFGCISEAFRQFSQMQVHNVVSWTAIISGFVQKDATIFALKLFKDMRAIGHEINSYTVTCVLSACANPDMIKEAGEIHSLVLKLGLNLDPKIGAAIVNMYAKIGEVELSELAFNEMKNINDQSIWAAMLFSFAQNQNSRRAVELFRVMLGGVKPDEYCVSSVLSIISCLSLGSQIHGYALKSGLVSDFSVGCSLLTMYSKCGCLEESFKVFQQIPVKDNVLWSSMISGFVEHGYADLALQLFKEMLYQGIIPDNITLVSILAACSDLCFLKTGLTPNHLIREMIEQWSKDQGIELSNSVQYIDEEGLNEADREHFLCLLKKMSSTLSDQKIAAKELRLLTKKHPCFPTPFPNRSSQFMGVILLVVVNPDLQEDIITTLLNISIHDNNKKLVAETPMVIPQLMRALKSGIIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDQFLTCVMHENKARAVKVILTKIKNQIHVDELLAILSLPSSHQKAVHDIGDLGAVPGLLRIIRERVRTQQGECVAVLQTICLYDRSKWKEIREEENSRKTISELAQNGTSRAKRKARGILERLNRVVNITHTA 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02522 890 NCBIfam pentatricopeptide repeat 522 555 IPR002885 -
Pste5g02522 890 NCBIfam pentatricopeptide repeat 122 156 IPR002885 -
Pste5g02522 890 Gene3D Tetratricopeptide repeat domain 59 171 IPR011990 GO:0005515
Pste5g02522 890 Gene3D Tetratricopeptide repeat domain 472 573 IPR011990 GO:0005515
Pste5g02522 890 Gene3D Tetratricopeptide repeat domain 175 275 IPR011990 GO:0005515
Pste5g02522 890 SUPERFAMILY ARM repeat 629 880 IPR016024 -
Pste5g02522 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Pste5g02522 890 FunFam Pentatricopeptide repeat-containing protein chloroplastic 472 573 - -
Pste5g02522 890 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 208 576 IPR046960 GO:0003723|GO:0009451
Pste5g02522 890 Gene3D Tetratricopeptide repeat domain 375 471 IPR011990 GO:0005515
Pste5g02522 890 Gene3D Tetratricopeptide repeat domain 285 374 IPR011990 GO:0005515
Pste5g02522 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Pste5g02522 890 Pfam PPR repeat 495 516 IPR002885 -
Pste5g02522 890 Gene3D - 662 884 IPR011989 -
Pste5g02522 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Pste5g02522 890 FunFam Pentatricopeptide repeat-containing protein 230 374 - -
Pste5g02522 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Pste5g02522 890 Pfam PPR repeat family 519 566 IPR002885 -
Pste5g02522 890 Pfam PPR repeat family 119 165 IPR002885 -
Pste5g02522 890 Pfam PPR repeat family 321 369 IPR002885 -
Pste5g02522 890 Pfam PPR repeat family 221 268 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02522 Pste-Chr5 17737169 17741407 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02522 585 890 U-box Gene Family AT3G07360 53.823 3.10e-96 303