Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02512 CTTATTGTTTACCTCTGCTTGGGTTTGGGTTTGGGTAGGCTAGGCCGCGGATTGAAACAGAAAACCTGGCCGTGGACGATGAGGAGCTTCAGGATGAGAAACCTGTTGTCCACTGTCAAAAAGAAAAGCTTACAAAACAGAAACAGAACCTCACGAAACTGCATTTCCATTAGAAAAGAACTGGCACGTCTAGTGGAACAAAAACAAGAAGAAGTTACCGATGAAGGTTTCAGCATCAAAAGCTCTGCCCCGTCGCACACTCACGGTGTTCAGCCCTTGGGAAATCTCTATCTCAGCCCTTGTTCCGTTAACTCCAGAGACACTGGCTTAGGTAATCTTCGTACCCTTTCGGATGAGCTTGTTCTTGACATTCTCGGGTTTTTGGATGCTTCTTCCTTGAGGGTTTTAGCCACTGTGAGCAAATCTTTCTACGTGTTCACCAATCATGAACCCCTTTGGAGGAATCTCGTCTTGGAGAATCTTCTTGAAGGGTTTCAGTACAAAGGGTCTTGGAAATCCACTTATGTTTCTGCTTGTTACCCTTCATTTGATTTCTCTGCTAATGCCCTTGGGTGTTTCAAAGTTAGAGACTTTTACTCGGATTACCTATTCCAGAGTTGGCTCTGTGCTAATCTTGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGAAAAAGAGGAATTTCGGTTGAAGAATTTGTGTTGAATTTTGAAGAACCTAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGGTGCTTTGAGAAAGTGGGATAGGGATTATTTGGTGCAGTTGTGTGGTGATGTTAAGTTTGCAGTTGGACCAGTGGAGATGAAGCTTGGGGATTACTTTCGGTACTCCGATCAGGTTAGAGAGGAAAGACCTTTGTATTTGTTTGATCCTAAGTTTGCTGAAAAGGTTCCAAAATTGGGTGATGAATATGAGGTTCCCGTATACTTTAGTGAGGATTTGTTTGGTGTTTTGGGCAATGAGAGGCCTGACTACAGGTGGATTATTATGGGACCAGCTGGATCTGGATCTTCTTTCCATGTTGATCCCAATTCGACTTCGGCTTGGAATGCAGTTATCAAGGGGTCCAAGAAATGGATTTTGTTTCCTCCAGATGTGATTCCGCCTGGTGTTCATCCTAGTCCTGATGGGGCAGAGGTGGCATCTCCTGTTTCCATAATTGAATGGTTCATGAACTTCTATGGTGCAACAAAAAATTGGAAAAAGAAACCAATTGAGTGTGTATGTAAAGCTGGAGAGGTTATCTTTGTGCCCAATGGATGGTGGCATTTGGTGATCAACCTTGAAGAATCTATAGCCATAACCCAAAATTATGTCAGTAGGAGAAATTTGTTGAATGTCTTGGATTTTCTTAGAAGACCAAACGCCAGCACGCTGGTATCTGGAACGAGGGATCGAGTGAATTTGTACGATAAATTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGAAATTGATGAATTGAGCCGAAAAGAAGAAGAGAGAAAGATCCAGCAGAGGAAACTTTCCTTCTGGGATTCTGTCGCAGATACTAACATGGGAGCTTTCAAGTTCTCTTTCTAGAAAAATACAGAGGCAACTGATATTGCTGATCCACGTTGCAGGAAGATGCTAGCATGCATCAATTTTGACATTTTGTACTCTCAGTTTTTCATTGATTGTACTCACAGTTCCTTTTTAAATGCTGTAATGTAATGACAATCTTCCATGTTTCCCCTTGTTAATTATTCAAAGTGCAAAACAATGGATTCCTACTTGATGGAGGATGTCCATAGAAATGCCATGAGAGCA 1833 0.4212 MRSFRMRNLLSTVKKKSLQNRNRTSRNCISIRKELARLVEQKQEEVTDEGFSIKSSAPSHTHGVQPLGNLYLSPCSVNSRDTGLGNLRTLSDELVLDILGFLDASSLRVLATVSKSFYVFTNHEPLWRNLVLENLLEGFQYKGSWKSTYVSACYPSFDFSANALGCFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNKPVLLEGCIDNWGALRKWDRDYLVQLCGDVKFAVGPVEMKLGDYFRYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFSEDLFGVLGNERPDYRWIIMGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPIECVCKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLRRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELSRKEEERKIQQRKLSFWDSVADTNMGAFKFSF 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02512 508 ProSiteProfiles JmjC domain profile. 283 443 IPR003347 -
Pste5g02512 508 FunFam F-box protein At1g78280 178 428 - -
Pste5g02512 508 ProSiteProfiles F-box domain profile. 84 130 IPR001810 GO:0005515
Pste5g02512 508 SUPERFAMILY Clavaminate synthase-like 200 441 - -
Pste5g02512 508 Pfam F-box-like 92 132 IPR001810 GO:0005515
Pste5g02512 508 Pfam Cupin-like domain 208 426 IPR041667 -
Pste5g02512 508 Gene3D - 79 156 - -
Pste5g02512 508 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 84 505 - -
Pste5g02512 508 Gene3D Cupin 178 428 - -
Pste5g02512 508 SMART fbox_2 90 130 IPR001810 GO:0005515
Pste5g02512 508 SMART cupin_9 274 443 IPR003347 -
Pste5g02512 508 SUPERFAMILY F-box domain 82 152 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02512 Pste-Chr5 17635527 17638315 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02512 78 432 Glycosyltransferase AT1G78280 39.286 1.39e-76 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pste5g02512 Cupin_8 9e-24 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02512 5 17635527 17638315 Pste5g02512 5 17635527 17638315 ECH