Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02502 TCTTCTCCCATTCTCTGATCTGAAGGCGCTGAGGCTGCAAATCAACCACCATCGAACACGGCCATTCTGATTCTCTGCTGTTCTCTTTGTTTTCTACCTCTTTTCTCCTTCATCTCCATTGTCTTGTTTGTCTGATTTGCAGGGTTTCTTTTCCCCCCTCTCCCTCTCCCTCTCAACGGGAGTTCTTCTTCGCTCTACAAGATGAAGTACCAATCCACCTTCCGAGATCGAGGAAAAAAGTCTGAGGAAAACTTGGACAGGTTTATTCCGAATCGGTCAGCGATGGACTTCGATTACGCGCACTACATGCTGACGGAGGGTAATAAGATTAAGAAGAGGAAAGAGAAAGAGAACCAAGCGTACCAGAAGCAGCTGGCAGAGGCCTTGAACATGAACCGGACTCGAATCTTGGCCTTCAAGAACAAACCCCCTACGCCCGTTCAACTCGTTCCCACCGCCATCCTCTCCCCTCCTCCTCTACCCAAATCCTCTAAGCCCTTACGCTACATTCCTCAGAGTTCCGAGAGGACGTTGGATGCTCCTGATATACTCGATGACTTTTATTTGAATCTCTTGGACTGGGGCGCCTCCAATGTTCTTAGTATTGCCCTTGGAAATACCGTCTATCTATGGGATGCCTCTGATAGTTCCACCTCTGAACTTGTCACCGTGGATCAGGAAGATGGTCCCGTCACAAGTGTTGCCTGGGCTCCCGACGGACGCCATTTAGCTGTTGCTTTGAACAATTCTCATGTCCAGCTCTGGGATTCTCACACTTCTACTCTCGCAAGAACACTAAGAGATGGGCACCAAGCACGTGTGGGTTCACTGTCTTGGAACAATCATATCCTTACAACAGGAGGGATGGATGGTAGAATTGTTAACAATGATGTTAGAGTGAGGTCTCATATTGTTGACTATTATCGGGGACATCAACAGGAGGTCTGTGGGCTCAAGTGGTCTCCCTCAGGACAACAATTGGCAAGTGGTGGCAACGATAATGTTATTCACATATGGGACAAGGCGGCAGTCTCTTCAAATTCAAGGACCCCTTGGCTTCACAGGTTTGAGGAACATAGAGCTGCTGTGAAAGCACTAGCTTGGTGCCCCTTCCAAGCAAATGTGCTTGCCTCTGGTGGAGGTGAGGGTGATGACTGCATTAAGTTCTGGAACACCCACACGAGTGCATGCTTAAACTCTGTTGACACAGGCTCACAAGTCTGCGCTCTGCTGTGGAACAACAATGAGCGTGAGTTGCTCAGCTCACATGGTTTTACACAGAACCAGCTCACTCTTTGGAAATACCCTTCAATGCTAAAGATGGCAGAACTCAAGGGTCATACCTCCAGGGTGCTGTTTATGGCACAAAGTCCAAATGGTTGTACTGTGGCCTCTGCAGCAGGAGACGAGACTCTGAGATTTTGGAATGTCTTTGGAACTCCACAGACTTCCAAACCAGTACCGAAAGCTTACACTGAGCCCTTTTCTCATGTGAACCGTATTCGTTGAGCCGGAGCCTGTGAGTGTAGATTATGGTAAATTTATAAACATACATCTAATTATACAAAGATAATGAATTAATTTGTATGATTGGAAAATTTCAATTTATTGTTGATCTGATCTTTTTTGTTCTGTTTTTAATGTTTCTGATAACCTCATAAATCACCTCATTTTGGCCTGTATGTTGC 1688 0.4633 MKYQSTFRDRGKKSEENLDRFIPNRSAMDFDYAHYMLTEGNKIKKRKEKENQAYQKQLAEALNMNRTRILAFKNKPPTPVQLVPTAILSPPPLPKSSKPLRYIPQSSERTLDAPDILDDFYLNLLDWGASNVLSIALGNTVYLWDASDSSTSELVTVDQEDGPVTSVAWAPDGRHLAVALNNSHVQLWDSHTSTLARTLRDGHQARVGSLSWNNHILTTGGMDGRIVNNDVRVRSHIVDYYRGHQQEVCGLKWSPSGQQLASGGNDNVIHIWDKAAVSSNSRTPWLHRFEEHRAAVKALAWCPFQANVLASGGGEGDDCIKFWNTHTSACLNSVDTGSQVCALLWNNNERELLSSHGFTQNQLTLWKYPSMLKMAELKGHTSRVLFMAQSPNGCTVASAAGDETLRFWNVFGTPQTSKPVPKAYTEPFSHVNRIR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02502 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 410 IPR001680 GO:0005515
Pste5g02502 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 377 410 - -
Pste5g02502 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 157 189 - -
Pste5g02502 435 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 13 417 IPR033010 GO:0010997|GO:0097027|GO:1904668
Pste5g02502 435 Pfam WD domain, G-beta repeat 286 324 IPR001680 GO:0005515
Pste5g02502 435 Pfam WD domain, G-beta repeat 375 409 IPR001680 GO:0005515
Pste5g02502 435 Pfam WD domain, G-beta repeat 241 273 IPR001680 GO:0005515
Pste5g02502 435 SMART WD40_4 192 230 IPR001680 GO:0005515
Pste5g02502 435 SMART WD40_4 327 367 IPR001680 GO:0005515
Pste5g02502 435 SMART WD40_4 234 273 IPR001680 GO:0005515
Pste5g02502 435 SMART WD40_4 370 409 IPR001680 GO:0005515
Pste5g02502 435 SMART WD40_4 150 189 IPR001680 GO:0005515
Pste5g02502 435 SMART WD40_4 282 324 IPR001680 GO:0005515
Pste5g02502 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 157 198 IPR001680 GO:0005515
Pste5g02502 435 SUPERFAMILY WD40 repeat-like 123 410 IPR036322 GO:0005515
Pste5g02502 435 Coils Coil 44 64 - -
Pste5g02502 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 273 IPR001680 GO:0005515
Pste5g02502 435 Pfam Anaphase-promoting complex subunit 4 WD40 domain 156 214 IPR024977 -
Pste5g02502 435 Gene3D - 65 412 IPR015943 GO:0005515
Pste5g02502 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 273 - -
Pste5g02502 435 ProSitePatterns Trp-Asp (WD) repeats signature. 396 410 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02502 Pste-Chr5 17580130 17582174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02502 203 410 Miscellaneous Gene Families AT5G08390 22.430 1.31e-06 48.9