Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02499 AAGGTTTTAGAGATGGAAAGCAAGACAGAAAGTCATATCACATCAGCTGCGGCCTTTGTTGAAGGGGGAGTTCAAGAATCCTGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTTCTACAAGTGATCCTTCAACGGTCACCAACTGCAAGCACGAATTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAGCCTATCAGCTTGAAGGATCCTACTAGTCAGGAATTGTTTGAGGCAGTGGAGCAGGAGAGAAGCTTGAGAGCAACCCCATCAAGAAATGCTGCTTTTTTTCGTCACCCTGCCTTTGGTGATTTTGAATTGCAGCATTTGCGCATGAGTGTAAGTGAAGCTGATTTTGAAGAACAAATTATTCAACGTTTAGCAGCTGCTGCAGCAATGAGGAGAGCAAACCATTTTGCTCAGAGGGAAGTGCAGCGAAGTCGTTCATCAGTTCATGATCATCCACACTTCTTAGTGCTCTCTAATCAGCCTATTGCGCCTTCATCACACCCTGATTCAGTTGTTGGAGGGGAAAATGACCCAAGTGCAATTCCTAATAGAAGTCCATACCCAACAACATCTGATGGAAATGAAGCATCGCAGCAGATCCTGCACCTTCAAACTCAAAACTCTTCTTCAGCTTCTGGATCTACTGTCATGTCTAGAAATCACCAAGGAGTTTACTCTTATGACAGAGGCTCTAATGCTCATTTGTCACCAGCAAACCAAGATAGAGCAGAGCCATCAGAATTCCATTCATTTTCTGATTCACTGCGATCTAGACTTAATGCAGTGTCTATGAGATACAAAGAGTCAATCTCAAAGGGTGCAAGGGGATGGAAGGAGAGGTTGTTCTGTCGTAGTTCTTCCATGTCAAAGCTTGGTTCAGAAACAAGGAGGAGAGAGATGAATGCTGGAATTGCCGGTGTATCCAGATTCATGGAATCCCTTGAAATTAGTGGCGATAATAGAGTTGTGGGTAATTCTTTGTCAAATCACATGGAGCATTGTTCCATGGGAGGTGTGAGCAACCAGAACAACGTTGAAGCTAGTGGGGATAACTCTTCACATGATGAAAATACTTCACCTGCTTGTTCTGCTAGTTCACATTTAAATTGA 1149 0.4386 KVLEMESKTESHITSAAAFVEGGVQESCDDACSICLEEFSTSDPSTVTNCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELFEAVEQERSLRATPSRNAAFFRHPAFGDFELQHLRMSVSEADFEEQIIQRLAAAAAMRRANHFAQREVQRSRSSVHDHPHFLVLSNQPIAPSSHPDSVVGGENDPSAIPNRSPYPTTSDGNEASQQILHLQTQNSSSASGSTVMSRNHQGVYSYDRGSNAHLSPANQDRAEPSEFHSFSDSLRSRLNAVSMRYKESISKGARGWKERLFCRSSSMSKLGSETRRREMNAGIAGVSRFMESLEISGDNRVVGNSLSNHMEHCSMGGVSNQNNVEASGDNSSHDENTSPACSASSHLN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02499 382 MobiDBLite consensus disorder prediction 238 264 - -
Pste5g02499 382 SUPERFAMILY RING/U-box 25 80 - -
Pste5g02499 382 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 16 81 - -
Pste5g02499 382 MobiDBLite consensus disorder prediction 171 209 - -
Pste5g02499 382 MobiDBLite consensus disorder prediction 238 258 - -
Pste5g02499 382 FunFam E3 ubiquitin-protein ligase RHF2A 4 106 - -
Pste5g02499 382 MobiDBLite consensus disorder prediction 346 382 - -
Pste5g02499 382 MobiDBLite consensus disorder prediction 195 209 - -
Pste5g02499 382 Pfam Ring finger domain 31 72 IPR001841 -
Pste5g02499 382 SMART ring_2 32 72 IPR001841 -
Pste5g02499 382 ProSiteProfiles Zinc finger RING-type profile. 32 72 IPR001841 -
Pste5g02499 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 81 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02499 Pste-Chr5 17520600 17524456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02499 29 80 C3H Transcription Factor Family AT4G00335 44.231 1.52e-12 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02499 5 17520600 17524456 Pste5g02499 5 17520600 17524456 ECH
Pste5g02499 5 17520600 17524456 Pste4g02735 4 19330261 19337284 PCT