Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02493 GATACCGATTTTGAAGACTTTGGTGATGACCTTTCTAAGGAAGTAGAATTAGGATACCTTTCTCCAAAATTAAACGAATTAATAAAAATATTTAAATCATTTGGAGAATGTAATGATGTTCTGTGCCTCATATTTGTTGAAAGGATTATCACAGCTAAAGTCATCGACAAATTTGTAAAGAAAGTTAAGTTCTTGTCCCATTTTACAGTCTCATATTTGACTGGAAGCAATACATCTTCTGGTTCACTAGCACCAAAAGAACAGAGAGAAATCTTGCAGCTTTTCTCCAATGGAAAGGTAAATCTACTATTTGCCACTGATGTTGTTGAGGAAGGAATTCATGTACCAAATTGCTCTTGTGTAATTCGTTTCGATCTTCCAAAGACGATTCGCAGTTATGTCCAATCAAGGGGACGAGCACGACAAACTAATTCATTATTTCTGGAAATGGTTGAGAGGGGAAATTTGAAGCAAAGAAATCAGTTGTTTGATATTATTAGGAGTGAATATTCAATGAAAAATACAGCAAAAAGAAGAGAACTGGAGGCATTTAATTTGGAAACTTATAGAACTCCGAAGACATGTGCTTATTATGTTGATGCAACTGGTGCATGTGTCACTACAGATTCTAGTGTCAGTCTCGTCCATAGATATTGTGAAAAGTTGCCTTCCGATAAATACTTTATTCCTAAACCAGTATTCCAGTTCTCAAATTCTGGTGGCCAATATGAATGTAAATTAATATTGCCTCCTACGTCACCTTTCCAAATAATAATTGGTCCTCCAAGTACGAATTCTCATTTGTCAAGGCAGCTTGTATGTTTGGAGGCATGTAAGAAGCTTCATGAGTTAGGTGCTCTTAATGATCATCTTCTACCCTTTTCAGAAGAGCCACCAGAAAGTAATATTAGCTCGAGTTGGAAAAATTCACCATCAGGTGAAGGAACAACCAAAAGAAAGGAATTGCATGGGACAGTATCCATTCATGCTCTATCTGGAGGTTGGGCCTCAAGTCAAAATGGGGCCACTTTTCATGCCTATAAATTTGATTTCTCTAGCAACACTGAAGAGATTTATTCTGGATTTGTTCTTCTGACTGGTTCAAAACTAGACAATGATGTAGGAAATATTGAGAAAGATCTTTACTTGATCTCAAAGACAGTTACTTCTCATGTTTCTTCAGGAGGTGAACTGTATTTGAATTCAGAACAGATGATGCAAGCTAAGTGCTTTCATGAACTTTTCTTTAATGGTTTATTTGGAAAACTTTTTGTTGGATCTGAAGAAGCTGGCACAAAGAGGGAATTTTTACTTCAGAATCAAATAACTGAGCTATGGAACCCATTAAAAATGTATTTGCTTTTGCCACTTGAGACATTGAATAGTTCTAGTGTAGCCTGTAGAATAAACTGGAGAGGAGTGAGCTCTTGTGTGTCAGTGATAAATTTTTTGAAAAGAAAGTTCTCATTGAGTTCTGAGAATTGTCCCAAACAGAAGTTATCAAATTGGAGTGATTCATCTGATGCTGAGCGAAAGACCTCAAGTAAAGTCCATTTTGCTAATTGTTTTCTTGATGTTAATGATATCAAAGATGTGGTGGTGTTGGCTATTCACACTGGAAGGTTCTACTCTATAGTTGAGATTGTAAAAGATTCATCTGCAGAGTGTCCTTTCAGTTACGATGGGGAAGATGTGGATTCATCATCAGATTATAGACAGCCTTTGCTGCGGTTAAAGCAAAGTCATAACCCACATAATCTTCTAGTGAAATTCAATGGAAATGCCTCAGTTCTGAAAAACTCACAAGTCCATGCTTATATGCCACCTGAGGTTTTAATAAGAACTGATTTTACAAAAGAAGTTATGAAGTCAATTTACTTACTCCCATCATTAATGTACCACTTGGAATCGTTGATGTTAGCAAGTCAGCTAAGAAAGGAGATTGATTTAGACAATGACAGATTTCAGATATCGAGTTCATTGATTCTAGAAGCATTGACGACACTAAAATGTTGTGAAAGTTTCTCAATGGAGCGTTTGGAATTGCTTGGAGATTCTATTTTGAAGTATGCAGTGAGCTCCCACCTTTTCCTTAGATATCCAGAGAAACATGAAGGGCAGTTATCTGATTGGCGTTCAACTCTAACTTCTAATTCATCACTACATAGATTTGGAATAGAGTGCAAATTACAGGGATATATATATGACAGTGCATTTGAGCCACGTCGCTGGGTGGCTCCAGGGCAGTACTGTATACATCCTGTTCCTTGTGGATGTGGGGTGGATACTTTTGAAGTACCTTTGGATAAAAAATTCCAAACTGATAACCCAAAAGTTAAGATTGGAAAGTTCTGTGACAAAGGGCATAGGTGGATGTGTTCAAAAACTATAGCTGATTGTGTTGAAGCCCTCATAGGAGCTTATTATATTGGTGGTGGCCTTACAGCTGCACTTCATGTGATGCAGTGGCTGGGTACGAATGTCGGGCATGATTCACTATTTGTACATGAAGCCATCACCAGGGCATCATTGAGGTCCTATTTCCCAAAAGCTAATAATATACAAGCCTTGGAATTGAAGCTCGGGTATGAATTTTCCACTAAAGGGCTGTTATTGGAGGCCATGACACATCCATCTCAGCAAGAGCTGGAACCAGGAATTTGTTATTGTTACCAGAGACTTGAATTTCTAGGTGATTCAGTGTTGGGCTTTCTAGTTACACGACATATTTATGAGAGCTACCCAAATATTGATCCTGGCTTATTGACTAGTTTACGTTCTGAAGCTGTTAGCAATGAAAACTTTGCTCAATGCTGCGTAAGAAGGAATCTTCACCCACATCTTCAGCACTGTTCTGGGATTCTTCAAAGTCAAGTAACAAAGTTCATCAGTTCAATGACTGAAACTACTAACAGCTCCAAGTTAAGAGGAAAAGCTCCAAAGGCACTTGGAGACATGGTTGAAAGCATTGCAGGGGCTATGCTCATTGATACCAAGCTTGACATTGAGAAAGTGTGGAGAATATTTGAACCATTGTTGTCTCCAATTGTGACCCCTGAAAATCTTGAGCTCCCCGCCCTCTGTAAACTGCATAAATTATGTGATTGTCTAGGCTACTTTATAAAAGAGTTATCCACAAAAGAGGGGGAACTTCATCATGTTGAACTTCAATTGCAGCTGGAAGATTTTCTTTTGGTAGGGAGAGGGACTGATAGAAACAAAAAAAGAGCAAAAGGAGCAGCCGCACATTATTTGTTAGAGGGACTTGAGAATAAGGGTATTTTATACTCGAAGTGCATTTCCAAGAGGAGGAAACATGAGTTCAATGATGTTGGCATTTCATCTTCAGTAGACATGAGAGTTGATACTCTTAGAAACAGAATGCAAAAGAATGGAAGTGATTGCACAGCAGAGTCAAATGATTCTTTCCCAGTCAATGACTGTTCTAAGAAAACCTACTGCATTAGTTCCACCCCACCAGTTATTGAATCAATTGACATAAAGAAAGGAGGACCACGAACATCAATTTATAGTATATGTAAGAAATTACAGTGGCCACTGCCAAAATTCATTTGCAAAGAGACCAAATCCAGCACTCCAATTGAATTCGGTGAAGGCTCTGGGAAAAGAATTGGTTTCAACAGTTTTATATCTAATATCATCTTGCAGATACCCAACTCAGGCATCATTGAGTGTACAGGAGATCCCAAAGCTGACAAGAAGAGTTCATTTGACTCTGCAGCAACTGCGCTGCTTTATGAACTCGAGCAACAACAAAAAATAGTTATCGTTAAGCCT 3798 0.3815 DTDFEDFGDDLSKEVELGYLSPKLNELIKIFKSFGECNDVLCLIFVERIITAKVIDKFVKKVKFLSHFTVSYLTGSNTSSGSLAPKEQREILQLFSNGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTIRSYVQSRGRARQTNSLFLEMVERGNLKQRNQLFDIIRSEYSMKNTAKRRELEAFNLETYRTPKTCAYYVDATGACVTTDSSVSLVHRYCEKLPSDKYFIPKPVFQFSNSGGQYECKLILPPTSPFQIIIGPPSTNSHLSRQLVCLEACKKLHELGALNDHLLPFSEEPPESNISSSWKNSPSGEGTTKRKELHGTVSIHALSGGWASSQNGATFHAYKFDFSSNTEEIYSGFVLLTGSKLDNDVGNIEKDLYLISKTVTSHVSSGGELYLNSEQMMQAKCFHELFFNGLFGKLFVGSEEAGTKREFLLQNQITELWNPLKMYLLLPLETLNSSSVACRINWRGVSSCVSVINFLKRKFSLSSENCPKQKLSNWSDSSDAERKTSSKVHFANCFLDVNDIKDVVVLAIHTGRFYSIVEIVKDSSAECPFSYDGEDVDSSSDYRQPLLRLKQSHNPHNLLVKFNGNASVLKNSQVHAYMPPEVLIRTDFTKEVMKSIYLLPSLMYHLESLMLASQLRKEIDLDNDRFQISSSLILEALTTLKCCESFSMERLELLGDSILKYAVSSHLFLRYPEKHEGQLSDWRSTLTSNSSLHRFGIECKLQGYIYDSAFEPRRWVAPGQYCIHPVPCGCGVDTFEVPLDKKFQTDNPKVKIGKFCDKGHRWMCSKTIADCVEALIGAYYIGGGLTAALHVMQWLGTNVGHDSLFVHEAITRASLRSYFPKANNIQALELKLGYEFSTKGLLLEAMTHPSQQELEPGICYCYQRLEFLGDSVLGFLVTRHIYESYPNIDPGLLTSLRSEAVSNENFAQCCVRRNLHPHLQHCSGILQSQVTKFISSMTETTNSSKLRGKAPKALGDMVESIAGAMLIDTKLDIEKVWRIFEPLLSPIVTPENLELPALCKLHKLCDCLGYFIKELSTKEGELHHVELQLQLEDFLLVGRGTDRNKKRAKGAAAHYLLEGLENKGILYSKCISKRRKHEFNDVGISSSVDMRVDTLRNRMQKNGSDCTAESNDSFPVNDCSKKTYCISSTPPVIESIDIKKGGPRTSIYSICKKLQWPLPKFICKETKSSTPIEFGEGSGKRIGFNSFISNIILQIPNSGIIECTGDPKADKKSSFDSAATALLYELEQQQKIVIVKP 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02493 1266 Gene3D Ribonuclease III domain 642 827 IPR036389 GO:0004525|GO:0006396
Pste5g02493 1266 Gene3D Ribonuclease III domain 845 1020 IPR036389 GO:0004525|GO:0006396
Pste5g02493 1266 SMART riboneu5 660 833 IPR000999 GO:0004525|GO:0006396
Pste5g02493 1266 SMART riboneu5 869 1022 IPR000999 GO:0004525|GO:0006396
Pste5g02493 1266 CDD RIBOc 870 1022 IPR000999 GO:0004525|GO:0006396
Pste5g02493 1266 FunFam Endoribonuclease dicer-like 1 206 302 - -
Pste5g02493 1266 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 211 301 IPR005034 GO:0016891
Pste5g02493 1266 MobiDBLite consensus disorder prediction 298 313 - -
Pste5g02493 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 156 IPR027417 -
Pste5g02493 1266 SUPERFAMILY RNase III domain-like 639 829 IPR036389 GO:0004525|GO:0006396
Pste5g02493 1266 FunFam Endoribonuclease dicer-like 1 14 177 - -
Pste5g02493 1266 PANTHER DICER-RELATED 8 1094 - -
Pste5g02493 1266 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 23 181 IPR001650 -
Pste5g02493 1266 CDD RIBOc 660 824 IPR000999 GO:0004525|GO:0006396
Pste5g02493 1266 Gene3D - 1178 1257 - -
Pste5g02493 1266 Pfam Dicer dimerisation domain 211 297 - -
Pste5g02493 1266 SMART helicmild6 56 143 IPR001650 -
Pste5g02493 1266 ProSiteProfiles Ribonuclease III family domain profile. 854 999 IPR000999 GO:0004525|GO:0006396
Pste5g02493 1266 Gene3D - 14 178 IPR027417 -
Pste5g02493 1266 FunFam Endoribonuclease dicer-like 1 848 1020 - -
Pste5g02493 1266 Pfam Ribonuclease III domain 678 812 IPR000999 GO:0004525|GO:0006396
Pste5g02493 1266 Pfam Ribonuclease III domain 892 998 IPR000999 GO:0004525|GO:0006396
Pste5g02493 1266 ProSiteProfiles Ribonuclease III family domain profile. 641 813 IPR000999 GO:0004525|GO:0006396
Pste5g02493 1266 CDD SF2_C_dicer 19 151 - -
Pste5g02493 1266 ProSitePatterns Ribonuclease III family signature. 892 900 IPR000999 GO:0004525|GO:0006396
Pste5g02493 1266 MobiDBLite consensus disorder prediction 297 318 - -
Pste5g02493 1266 FunFam Dicer-like 104 636 825 - -
Pste5g02493 1266 Pfam Helicase conserved C-terminal domain 41 140 IPR001650 -
Pste5g02493 1266 Gene3D Dicer dimerisation domain 206 304 IPR038248 -
Pste5g02493 1266 SUPERFAMILY RNase III domain-like 853 1019 IPR036389 GO:0004525|GO:0006396
Pste5g02493 1266 SUPERFAMILY dsRNA-binding domain-like 1026 1096 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02493 Pste-Chr5 17471067 17480719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02493 39 140 Eukaryotic Initiation Factors Gene Family AT3G19760 33.010 1.47e-06 50.4