Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02471 TCCAGATTCTCCTGTAACTCCACCGCTTTCTCTCTCTCTCTCTGCGTTGTTGAAACATTCAGAAAATGGAGAACAACGCATTCAGAGATCGAATCTTAGCGGACAATGTACACGAAGAAGAAGAAATCCCTGATTCCTTCGTTTGCTGCGTTTGCCTGGATATATTATACAAGCCCATTGTTCTATCTTGTGGTCACATATGCTGTTTCTGGTGTATCTATAATTCAATGAATTGTCTGCGTGAGTCTCAATGTCCTGTATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAATTGCTTCATTTTTTGCTTCTCAAGGTCTATACTGTTGCTTACAAGAGAAGGGAAAACCAAACCCTTGAGGAAGAAAAGAAATCAGGATTCTACTCCCCTCAATTTGATCCTTATACATGTGAATCACAAGCTAAATTTGGTCATTCTGTCATCCCTTCTTCCCCCTCTATTATGAATTTAACACCCAACTCATACAATGTGGGAACTTCTGAATGTATGGAGCATTCAGGGTCCACCGCCCATGTAGGAGGCACTGTCAATTCTGACGAAGAGCATGATATTATTGGATCTCCTGCTGGAGGAAAAAAATTTCGTCAGGAAGAGCTTTCTTTACAACAGAAATTATCAGTTGCAGATGTGACGTGTACAATGTGCAAGCAACTTCTCTTTCGTCCTGTAGTTCTTAATTGTGGTCACGGTACTCAGTGCATTGAAGTTTTCTTCAATTATAACTGA 755 0.4066 MENNAFRDRILADNVHEEEEIPDSFVCCVCLDILYKPIVLSCGHICCFWCIYNSMNCLRESQCPVCRHQYYHFPTVCQLLHFLLLKVYTVAYKRRENQTLEEEKKSGFYSPQFDPYTCESQAKFGHSVIPSSPSIMNLTPNSYNVGTSECMEHSGSTAHVGGTVNSDEEHDIIGSPAGGKKFRQEELSLQQKLSVADVTCTMCKQLLFRPVVLNCGHGTQCIEVFFNYN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02471 229 SUPERFAMILY RING/U-box 19 76 - -
Pste5g02471 229 SMART ring_2 27 66 IPR001841 -
Pste5g02471 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 125 IPR013083 -
Pste5g02471 229 PANTHER UNCHARACTERIZED 18 221 - -
Pste5g02471 229 FunFam E3 ubiquitin-protein ligase PRT1 18 113 - -
Pste5g02471 229 SUPERFAMILY RING/U-box 195 218 - -
Pste5g02471 229 ProSiteProfiles Zinc finger RING-type profile. 27 67 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02471 Pste-Chr5 17243808 17247841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02471 9 69 C3H Transcription Factor Family AT2G42030 34.286 1.66e-07 49.3