Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02467 GTTTTTATCTCTCTTCTTCCACTTACTCTCTCCTTTGTGTGTTTGTGCTTGTTCTACCGACACGATTCCAACCTAATGGGGTTCACCCTGCTTCTGCGTAGGATTCAATGCTGCTGCTCCTTCTGCAACTGAGTTTCATATCTCCTTTCTGTTGATGCTTATGCTGAAGACCTGACAAATATCTGAGCAAGTTGTTTTCTACCCACCAACAAGATTAACTTAGAAATCACCTTTTGGAAGGTGTAGATGGCGATGCAAACTGTTTATTGTAAAGAACATGAAGGAAATGCACACAATTTTATGGGTTCGTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCCCAATCTGTTCATGGGGAGTCTTGTGCCCAAACGAAACCCTTTTCATTGGAGCTGCCTAACTGCTTAGATCAACTTGCTTCAGGAAAGCCATCGGCAAGAGGCGCTGAACAAGTTTTGGGCAAAGGGCATACCACTCAGTTTACCATATTTCCAGATGATTGTAAATTGGCAGAAGATGCACAAAAGCTTCAGACAAGCATATCACTGCAGTCATCACTTACTGATTCCCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGCACAAAGTATCCTTATACGGATCAATTTTATGGCCTATTCTCAACTTATGCACCCCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCTAAAGCTGTACTTGGTCACAAGTTGACTAAACGTCGCAAGCCGTATATGCACGAATCACGCCATCTGCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACACAAGAAATTCTGGCAGTGGAAATGGTAGAAGTGGAAGTGAAGTGAAAAGAACTGTTTATGAACAATTGCATTCCGGTGGGTCTCAGAGTTCTGAACTCCTTCAATCTGAGGTGGGAACTTTGAATTCATCAAAGGATACTAATGGCAGCAGTCCAAACATTTGTGGTTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTGGACAGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCACTGGCAGACATGATACCCCCCAAATGGGTTGCAGCAGCAGGCAACTGCTGCAACCTTAAAGTTTGATTTGCGAAGATCGAGGAGGGCATGGTGTAGCATTGCACCAAGCTCATCCTTGGCGAGACCAGATGAAGAAGCTTTGTTTCAGTTTCTTCTGTTGACTGTCACAAGTTTCGTTCTGTAGGATCGTCCTAACATCTGGTCTAGGCAATCCATCCTTGGCTCAATACTTTGGCAATCCATCCTTGGCTCATTCTAGTTTTAGGCAACTCATCCTTGGCTCAATATCTGTAGTACGTTGCCTTTCTGCACAGGATAGTCATTCGCATAGTACAGACTATTGACTTGATATCTTGATGCACAAGGCAACTATGTTTCTGTTCTTGTGTGAAAATAAAAGCATGAAACGCTAGTTTTGTGTGCTTTTAATAATGTTTAAATGTAGTGTTGTGTTCTGTATTTCTGCCTTTGAGGAGCAATGTATCATATAACTCTTGTGGTCTTCGTTAGAAAAATAAAGCATTGGTGTGTTTTTCTCCCGGAGTAATGCCAAAACTGTATTATTCTCTTTATTTGGTTGACTATCAAAGAACC 1740 0.4299 MAMQTVYCKEHEGNAHNFMGSLSSAASAPWWSAFGSQSVHGESCAQTKPFSLELPNCLDQLASGKPSARGAEQVLGKGHTTQFTIFPDDCKLAEDAQKLQTSISLQSSLTDSHSRFEIGFSQPMICTKYPYTDQFYGLFSTYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLGHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSGSGNGRSGSEVKRTVYEQLHSGGSQSSELLQSEVGTLNSSKDTNGSSPNICGSEVTSMYSRGGLDSFSLNHLGSAVHSLADMIPPKWVAAAGNCCNLKV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02467 321 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Pste5g02467 321 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Pste5g02467 321 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Pste5g02467 321 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 60 280 IPR001289 GO:0003700|GO:0006355
Pste5g02467 321 MobiDBLite consensus disorder prediction 217 232 - -
Pste5g02467 321 MobiDBLite consensus disorder prediction 208 232 - -
Pste5g02467 321 Gene3D - 159 221 - -
Pste5g02467 321 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Pste5g02467 321 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02467 Pste-Chr5 17234827 17240076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02467 1 321 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.529 5.46e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pste5g02467 CBFB_NFYA 2.6e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02467 5 17234827 17240076 Pste4g02695 4 19093830 19099103 PCT