LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g02466	TTTTCTCGCCCCATACACAATTCCTCTCCGTGCCACCTCTTAAGAGCTTCTGATCACTTTCCTTGTCCAACACCGTCTCAAGGTTTTTTTGTTGTGGGTAGCTTTTGGGGTGAGAAGATCTCTGGTCTCTTGGACATTGGGTTTGTCCTGATGAAGTCCACGATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATATATGATTATTTGATGAAAAGAAAATTACATGCCGCTGCAAAAGCTTTTGTCACTGAAGGAAAAGTTTCCACGGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTCTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCAGCAGCTTACATCGAGACCCAGCAAACTAAAGCTAGAGAACAACAACTTCAAATCCAGCAATTGCAACTAATGCAGCAACGCAGTGCCCAGTTACAGCGAAGAGATCCCAATCATCCTGCCCTTGGTGGTTCCATAAATGCCATGAACTCTGAAGGAATGTTGGGACAGCCACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGAACGGATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCTACTCTTATTGATGCCAATAGGATGGCCCTACTCAAATCGGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCCACTGCATTGCAGCAAATTCCAGGGCGGACTCCTTTGACCAGTGACATCAAAGGAGAAGTTAATTTAGGTGCCACTCCAAAGAGTGTGCCTGTGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGCTAGGCAGTGCAGGATTAAACCAAGGCGTTACAGGTCTTCCATTGAAAGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGACCTAATTTGGGTGTACAAGTTCCGAAGCCCAATTTGACAACCCAGAACCAATTTGTTTTGGCATCACAACAGCAACAGGTCTTGGCACAGGCTCAGGCACAAAATAGCCTTGGAAATTCTAATTATGGTGACATGGATCCTCGTAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAGTGCAAAGGATGCTCAGTCTACCAGAAATGATGGATCTATTTGCTCCCAACTGCAAGCAGATTCACCCAAGCAGATGAAGATAGCTCAGTCACAACATTCATTATCTCAACAGCAGGAGCAATTACAGCAGCAGAACAACAGAAAAAGAAAACAGCATTCTGGAACTGCCAATAGCACTGGTACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACACATACACCTGGTGATGGATTTAATACAGCTAGCAGCATGCAGCATGTTAACACTGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGTACCATCGTCAAATTTGCTGGAGGACATGGAACGATTTGGAGATGTTGATGCTTTAGATGATAATGTGGAATCCTTTCTATCAAATGGTGGTGGAGATGGTGGAAATCTCTATGGAACAGTGAAACAAAGTCCAGCCGAGCAGCAAAAAGGGTCTTCGAAAGGCTTTACATTTGCTGAATTTGGTTCCATAAGAACAAGGAACAGCAAAGTTACTTGTTGCCACTTTTCTTCAGATGGAAAGTGGCTTGCAAGTGCTGGAGATGACATGAAGGTCATCATGTGGAACATGGACAATTTACAGACAGAGAGTACTCCTGCTGAACACAAATCAATTATTACAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCTACTGCCTCAATTGATAAATCTGTGCGTTTATGGGACACAACCAATGTAACAGACTTTTCCCAGTTTTCCTATAAATTATCTGTAACTTGCACATCTGATGTTTCAAAATTGTAA	1950	0.4292	FSRPIHNSSPCHLLRASDHFPCPTPSQGFFVVGSFWGEKISGLLDIGFVLMKSTMAQNQSNWEADKMLDVYIYDYLMKRKLHAAAKAFVTEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAREQQLQIQQLQLMQQRSAQLQRRDPNHPALGGSINAMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPTLIDANRMALLKSAASHQGQLVHGNSGNMSTALQQIPGRTPLTSDIKGEVNLGATPKSVPVDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQVPKPNLTTQNQFVLASQQQQVLAQAQAQNSLGNSNYGDMDPRRLSGLPRGSLSAKDAQSTRNDGSICSQLQADSPKQMKIAQSQHSLSQQQEQLQQQNNRKRKQHSGTANSTGTGNTAVPSPNSPPSTHTPGDGFNTASSMQHVNTVQKSMMMYGTEATGGLVPSSNLLEDMERFGDVDALDDNVESFLSNGGGDGGNLYGTVKQSPAEQQKGSSKGFTFAEFGSIRTRNSKVTCCHFSSDGKWLASAGDDMKVIMWNMDNLQTESTPAEHKSIITDVRFRPNSSQLATASIDKSVRLWDTTNVTDFSQFSYKLSVTCTSDVSKL	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g02466	649	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	592	624	-	-
	Pste5g02466	649	Pfam	LisH	66	91	IPR006594	GO:0005515
	Pste5g02466	649	ProSiteProfiles	Trp-Asp (WD) repeats profile.	550	591	IPR001680	GO:0005515
	Pste5g02466	649	Coils	Coil	404	428	-	-
	Pste5g02466	649	Pfam	WD domain, G-beta repeat	555	582	IPR001680	GO:0005515
	Pste5g02466	649	Pfam	WD domain, G-beta repeat	592	624	IPR001680	GO:0005515
	Pste5g02466	649	ProSitePatterns	Trp-Asp (WD) repeats signature.	569	583	IPR019775	-
	Pste5g02466	649	PANTHER	TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8	55	630	IPR044716	GO:0003714
	Pste5g02466	649	SMART	WD40_4	585	624	IPR001680	GO:0005515
	Pste5g02466	649	SMART	WD40_4	543	582	IPR001680	GO:0005515
	Pste5g02466	649	SMART	Lish	64	96	IPR006594	GO:0005515
	Pste5g02466	649	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	550	585	-	-
	Pste5g02466	649	MobiDBLite	consensus disorder prediction	356	463	-	-
	Pste5g02466	649	Coils	Coil	135	155	-	-
	Pste5g02466	649	Gene3D	-	520	644	IPR015943	GO:0005515
	Pste5g02466	649	SUPERFAMILY	WD40 repeat-like	549	629	IPR036322	GO:0005515
	Pste5g02466	649	MobiDBLite	consensus disorder prediction	376	463	-	-
	Pste5g02466	649	ProSiteProfiles	Trp-Asp (WD) repeats profile.	592	633	IPR001680	GO:0005515
	Pste5g02466	649	ProSiteProfiles	LIS1 homology (LisH) motif profile.	64	96	IPR006594	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g02466	Pste-Chr5	17231079	17238294	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g02466	557	624	Miscellaneous Gene Families	AT5G08390	33.824	6.04e-07	50.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	LUG	Pste5g02466		WD40	4.8e-05	CL0186