Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02465 GGCGAAGTGAAGAATGGACGTCTGGGCACTCATTATCACTAAACTGAGAAATTCCCAATGGCTGCTGCTACGCCTTCTGTTTTCTCTTGTATCTGCAATACAATATACAACCCTTCCTTAACCCACTCTTCCGTTTCACTCACCAACTTCCCTCAAAGACCCCTCACTCTCAAACCCCAAAGTTTCACTCTTTCCTTTCTCCCTCTCCCACTTCACCGTCTTCCCCCTCCTTTCGCTGCCTTCGATGGCTTGGACCTGCCTCAAGACACCACAGAATCCGACCTCCCACAAACCTTTGAAAAAACACAACTTGAGGTTTCCGATTCAACCGATGCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCCATTACTAATTCCCAATTGGCTGAGCTCTTTCGAGAAGCTGGCACCGTCGCGTCTGTTGAGATTGTCTATGATCGTGTCACCGATAGAAGCAGGGGATTTGCGTTTGTTACAATGGGCTCTGTTGAGGACGCTAAAGAGGCAATTCGAATGTTCGATGGCTCTCAAGTTGGTGGCAGGACTGTGAAGGTTAACTTCCCAGAGGTGCCCAAAGGAGGGGAAAGGTTAGTAATGGGGCCTAAAATACGGAACAACTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCAGGAAACCTGGGCTGGGGACTGACCTCACAGGGTCTTAGAGAAGCTTTTGCTGCGCAGCCAGGTGTATTGAGCGCCAAGGTCATCTATGAAAGGAACAGTGGAAGATCTCGAGGTTTCGGGTTTGTTTCTTTTGAAACTGCTGAGTCTGCACAAGCTGCTTTGGACGTTATGAATGGTGTGGAGGTACAAGGTCGACCCCTGCGGTTGAATTTGGCTGAAGAAAAGACACCTTCATCTCCACCAGTAGTTGAGGAAAATACAGGCAGCAATGTTGGAAGCTCGGAATTGATGTCTACTGCCAGCACATAAGAGGAAATATATAATAGATAAAAATTTTGCCCGCAAAATGCATGTCATTTAACTTCATCTGAAAGGTTTATCTTGGCAAATCTCCTGTCAGTTGCTAGTCACATTGGCATACGCTAACTAGACGTCTAGACCTTCAGGCAGCTGTGAAATGGTCTTTGTTTTTGAACGAAATTGAACATATCTATTTTATACAGTTTGTGATTATGAAAGTCAAGCTTTCAGAGTTCAATGAGCTAATAATTTATTCAAA 1219 0.4537 MAAATPSVFSCICNTIYNPSLTHSSVSLTNFPQRPLTLKPQSFTLSFLPLPLHRLPPPFAAFDGLDLPQDTTESDLPQTFEKTQLEVSDSTDAGRLYVGNLPYSITNSQLAELFREAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGPKIRNNYRGFVDSPHKIYAGNLGWGLTSQGLREAFAAQPGVLSAKVIYERNSGRSRGFGFVSFETAESAQAALDVMNGVEVQGRPLRLNLAEEKTPSSPPVVEENTGSNVGSSELMSTAST 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02465 303 PANTHER OS02G0815200 PROTEIN 80 277 - -
Pste5g02465 303 Gene3D - 183 283 IPR012677 -
Pste5g02465 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Pste5g02465 303 Gene3D - 69 177 IPR012677 -
Pste5g02465 303 SMART rrm1_1 95 168 IPR000504 GO:0003723
Pste5g02465 303 SMART rrm1_1 198 271 IPR000504 GO:0003723
Pste5g02465 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Pste5g02465 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 269 IPR000504 GO:0003723
Pste5g02465 303 CDD RRM1_PSRP2_like 95 174 - -
Pste5g02465 303 SUPERFAMILY RNA-binding domain, RBD 91 171 IPR035979 GO:0003676
Pste5g02465 303 MobiDBLite consensus disorder prediction 281 303 - -
Pste5g02465 303 FunFam 33 kDa ribonucleoprotein, chloroplastic 179 283 - -
Pste5g02465 303 SUPERFAMILY RNA-binding domain, RBD 194 280 IPR035979 GO:0003676
Pste5g02465 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Pste5g02465 303 CDD RRM2_NsCP33_like 198 273 - -
Pste5g02465 303 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02465 Pste-Chr5 17205243 17207390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02465 87 276 Eukaryotic Initiation Factors Gene Family AT3G16380 34.536 4.57e-26 105