Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02462 CTTGTAATTCCTCAACAGGAATGAAGGAGTTGTTATCGGGTTTGTTCTTGAAGGGAAAGAAGCAGCAGCAACAAGGTGAGAATGAAGGAGGTGGGATGGAGATGGAGACGTTCTTGAAAGAAGTGGAATCAGTGAAGGAAGAAGTGAAGGAGCTAGAGCGTCTGCAGCAAAGTCTCCGAGCCACAAACCAGCAGGGAAAAGCGCTTCACAGTCCAAAGGGCGTTAGGGACCTTCGCTCTCGTATGGACCTGGACATCGCTCTCTCTCTCACCAAAGCAAAGCACGTCAAAACTCGCTTGGAGTCTCTCCACCGCGCCAACCAAGCCTCCCTCTCCTTGCCCGATTGCGGACCCGGTTCCTACTCCCATCGGACCCGAACCGCCCTTGTTGGTGCCCTCACCAACAACCTCAAACACTCCATGGACACTTTCAATACCCTCAGGGACCAGATATCCTACGAGTACAGAGACACTCTGCAACGTAGATACTACGCTGTCACTGGACACAACCCTGATCAACAAACCATTGACCTCCTCATCTCCACCGGTGAGAGTGAAACATTCTTACAGAAAGCCATCCAACAGCAAGGGAGAGCCACCATCATGGACACCATCCAAGAGATTAAGGAGAGACACGGCACGGTGAAAGAGATAGAGAGAAATCTTCACGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGTTGATCCAACCCCAGGGTGAACACTTAGATGACATCGAGAGCCACGTGGCACTTGCTAATTCCTTCGTAAACAAAGGGGTGCAGAATTTGCAGGTTGTGAAGAATCATCAAAAGAACACCCGCAACTTGACCTGTTTTGCCATACTCCTCTTCATTATCATGTTGGTCATAGTTCTCCCTATTGTCTTCAGAAAT 896 0.4967 MKELLSGLFLKGKKQQQQGENEGGGMEMETFLKEVESVKEEVKELERLQQSLRATNQQGKALHSPKGVRDLRSRMDLDIALSLTKAKHVKTRLESLHRANQASLSLPDCGPGSYSHRTRTALVGALTNNLKHSMDTFNTLRDQISYEYRDTLQRRYYAVTGHNPDQQTIDLLISTGESETFLQKAIQQQGRATIMDTIQEIKERHGTVKEIERNLHELHQVFLDMAVLIQPQGEHLDDIESHVALANSFVNKGVQNLQVVKNHQKNTRNLTCFAILLFIIMLVIVLPIVFRN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02462 292 Gene3D - 28 155 - -
Pste5g02462 292 Pfam SNARE domain 236 286 IPR000727 -
Pste5g02462 292 SMART SynN_4 23 149 IPR006011 GO:0016020
Pste5g02462 292 SMART tSNARE_6 193 260 IPR000727 -
Pste5g02462 292 Coils Coil 28 58 - -
Pste5g02462 292 CDD SynN 28 185 IPR006011 GO:0016020
Pste5g02462 292 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 25 155 - -
Pste5g02462 292 CDD SNARE_syntaxin1-like 197 258 - -
Pste5g02462 292 Gene3D - 187 290 - -
Pste5g02462 292 ProSitePatterns Syntaxin / epimorphin family signature. 204 243 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pste5g02462 292 PANTHER SYNTAXIN 37 280 IPR045242 -
Pste5g02462 292 FunFam Syntaxin 132 191 290 - -
Pste5g02462 292 Pfam Syntaxin 31 233 IPR006011 GO:0016020
Pste5g02462 292 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 198 260 IPR000727 -
Pste5g02462 292 SUPERFAMILY t-snare proteins 26 253 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02462 Pste-Chr5 17189160 17191266 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02462 24 272 SNARE and Associated Proteins AT3G11820 59.438 2.40e-108 315