Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02458 ATGAACGACTTGTTCTCGACCACCTCTTCCTTCCGCGGCCACCACGATATCGAGATGATTGGCGACGGCGAGGGCGAGGGCGAGGGCGAGGACGGAGGATTGGAGAAATTCTTCGGCGACGTGGAAGCGATAAAAGAGGAGCTGAACCAGGTGGAGCGGTTGAAGAGGAATCTGAAAAGTTCCCACGAACACACGAAAACTCTTCACAAAGCGAACGCCGTGAAGGAGATACGGTCGTCGATGGAAGCTGACGTGGCACTGGCTCTGAAGAAGGCGAAGGTGGTGAAGCTGGCATTGGAGGCACTAGAACGTGCCAACGCCGACCACCGGAGCGTGCCCGGTTGTGAAGCCGGTTCGTCATCGGACCGGTCCCGAACCGCCGTGGTGGTGGCGTTGTGGAAGAAGCTGAAGGACTCCTTGGAGGGCTTCAATGGACTGCGGCACGAGATCAACTCCGAATACCGTGAGACCGTTCAACGCCGGTATTTCACCGTCACCGGCCACAAACCCGACGACAAAACCCTCGACCTCTTGATCTCTACCGGTGAGAGTGAGGTTTTTCTACAGAAAGCCATTGAAGAGCAGGGAAGGGTTGGAATTGAGGATACCATTATCGGAATTAAAGAGAGGCATGATGGTATGAAAGAGTTAGAAAATAATCTTAAAGAGTTGCATCAGGTGTTCCTTGACATGGCAGTGCTGATTCAATCTCAAGGGGAGCAATTGGATAACATAGAGAGCCACTTGGCAAGAGCTAACTCCTTCGTGAGGAATGGGATTCAGCAGTTGCAAACTGCAAGTAAGCACAAGAAAAAGTCCAAGAAATGTATCTGTTATGCTCTTGTCCTTTTTCTAGTGGTTGTTTTGATCGTTTTGTTGGTGCTCTTCACTCTAAGACCGTGGGAACATGTATAA 915 0.5104 MNDLFSTTSSFRGHHDIEMIGDGEGEGEGEDGGLEKFFGDVEAIKEELNQVERLKRNLKSSHEHTKTLHKANAVKEIRSSMEADVALALKKAKVVKLALEALERANADHRSVPGCEAGSSSDRSRTAVVVALWKKLKDSLEGFNGLRHEINSEYRETVQRRYFTVTGHKPDDKTLDLLISTGESEVFLQKAIEEQGRVGIEDTIIGIKERHDGMKELENNLKELHQVFLDMAVLIQSQGEQLDNIESHLARANSFVRNGIQQLQTASKHKKKSKKCICYALVLFLVVVLIVLLVLFTLRPWEHV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02458 304 PANTHER SYNTAXIN 45 289 IPR045242 -
Pste5g02458 304 SUPERFAMILY t-snare proteins 32 259 IPR010989 GO:0016020|GO:0016192
Pste5g02458 304 Gene3D - 30 164 - -
Pste5g02458 304 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pste5g02458 304 SMART SynN_4 29 155 IPR006011 GO:0016020
Pste5g02458 304 Gene3D - 200 298 - -
Pste5g02458 304 SMART tSNARE_6 199 266 IPR000727 -
Pste5g02458 304 FunFam Syntaxin 132 197 297 - -
Pste5g02458 304 Pfam SNARE domain 240 292 IPR000727 -
Pste5g02458 304 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Pste5g02458 304 CDD SNARE_syntaxin1-like 207 265 - -
Pste5g02458 304 Coils Coil 34 64 - -
Pste5g02458 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Pste5g02458 304 CDD SynN 34 191 IPR006011 GO:0016020
Pste5g02458 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02458 Pste-Chr5 17161469 17163531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02458 29 278 SNARE and Associated Proteins AT3G11820 63.095 2.40e-111 323
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02458 5 17161469 17163531 Pste4g02682 4 19014018 19023722 PCT