Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02456 ATGGAGAGAGGGTGGAAGGCTGATAGTAGTGTTACTGTTGAGATTTCACCAAATTGTCCAAGGTGTGGTTCTTCCAATACCAAGTTCTGCTACTACAATAACTACAGCTCATCACAACCACGCTACTTTTGCAAGGGCTGCAGAAGATACTGGACCAAAGGAGGATCCCTCAGAAACGTGCCTGTTGGTGGTGGCTGCCGCAAAAGTAGACGGGGTAAGTGTAACAATAACAACACCTTGAGACAAGCCAATGTTAACGCAGTTGGACATAATATCGATAGCGATATGAGAAGGGCTTCATCTTCAGTGGTGTCAGTGTCTGATGCTCCCAATATTGATCTCGCACAAGTTTATGCAAGTTTTCTCAACCACAAGCCAGACCAAGTGCAAACACTTTGCTGTCCTTTTTCTGATCTCAACACTGATTTTGATTTTGGTCACACTGCTTTCTCTCAAGAACTTGGTCTCACTGATTTTGGTGACGATATCCACATGTACTTTTGCGGGTTCAACTCTATCCAGATGCATACTACAAATACAAATTTTGAGTTGCCACCGTTGCCTGGTGAAGAGGCACAAATCTCTCATGCAGATATGTTGTGGTCCAAATCCAATTCTCATGAAATAATTGCAGATCATGCTTTACAAGCCACCAAACCGCCCCTTTTTGCACCTCAAGCTTATGATGCAGAATTCTTAATGAGCAATTGTTGGAACCACTTCGATTTACCAAGGGATGCTTCTTTTTTCGCTCCTTCATAA 762 0.4304 MERGWKADSSVTVEISPNCPRCGSSNTKFCYYNNYSSSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRGKCNNNNTLRQANVNAVGHNIDSDMRRASSSVVSVSDAPNIDLAQVYASFLNHKPDQVQTLCCPFSDLNTDFDFGHTAFSQELGLTDFGDDIHMYFCGFNSIQMHTTNTNFELPPLPGEEAQISHADMLWSKSNSHEIIADHALQATKPPLFAPQAYDAEFLMSNCWNHFDLPRDASFFAPS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02456 253 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 166 IPR045174 GO:0003700|GO:0006355
Pste5g02456 253 Pfam Dof domain, zinc finger 18 71 IPR003851 GO:0003677|GO:0006355
Pste5g02456 253 ProSitePatterns Zinc finger Dof-type signature. 19 55 IPR003851 GO:0003677|GO:0006355
Pste5g02456 253 ProSiteProfiles Zinc finger Dof-type profile. 17 71 IPR003851 GO:0003677|GO:0006355
Pste5g02456 253 ProSiteProfiles Link domain profile. 1 49 IPR000538 GO:0005540|GO:0007155
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02456 Pste-Chr5 17106754 17107515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02456 5 247 C2C2-Dof Transcription Factor Family AT3G52440 42.636 2.88e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste5g02456 zf-Dof 4.9e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02456 5 17106754 17107515 Pste5g02456 5 17106754 17107515 ECH
Pste5g02456 5 17106754 17107515 Pste4g02670 4 18923874 18924737 PCT