LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g02451	ATTTTGTTTTGTACAGATAATTTGGTTAAGGCAAAGGCAACCCCACCAACAGAACCTAAAACAAACAAGGAGGCCAACAATAACATTGCTGCCCAAACGTTCACCTTTAGGGAATTGGCTGCTATCACAAAGAACTTCAGGCAGGAATGCCTAATAGGTGAAGGTGGTTTCGGGAGGGTGTATAAAGGAAGACTTGAAAAGACCAACCAGGAAGTAGCTGTGAAGCAACTTGACAGGAATGGATTACAAGGGAACAGGGAGTTTCTTGTTGAAGTTTTGATGTTGAGCCTCTTGCACCATCCAAATCTAGTGAATTTAATAGGATATTGTGCTGATGGAGATCAGAGATTATTGGTGTATGAGTACATGTCATCGGGATCACTTGAGGACCATCTGCTTGATCTTCATCCAAGACAAAAGCCTCTAGATTGGTTCACCAGAATGAAAATAGCTTTAGATGCTGCAAAAGGGCTAGAATATTTGCATGACAAGGCCAATCCTCCAGTCATATACCGTGATTTAAAATCGTCTAACATCTTGCTGGACAAAGATTTCAATGCAAAACTCTCTGATTTTGGACTAGCAAAGTTGGGACCTACAGGGGACAAGTCTCATGTCTCTTCAAGAGTAATGGGTACATATGGATATTGTGCACCTGAGTATCAAAGAACTGGTCAGCTAACAGTAAAATCAGATGTGTACAGCTTTGGAGTTGTTTTGCTTGAATTGATCACTGGAAGGAGAGCCATTGACAACACAAGACCAACACGGCAGCAAAATCTAGTTTCTTGGGCATATCCAGTGTTCAAGGAGCCACACAGATACGGAGAGCTAGCAGACCCCCTTCTTGAAGCAAACTATCCAGTGAGATCTCTTCATCAAGCAGTGGCAGTAGCAGCCATGTGCCTGAATGAAGAGCCATCAGTGAGGCCCTTGATCAGTGATGTTGTCACTGCTCTTAGTTTCCTTGGCACTGCTCCAGGGAACCAAGACCTTGCAGGAATTTCTTCGCCTGTTGACATGCCCTCCCCACCACAAGACCAAGGGACCCCTTTGAATGTTCTTGATGATGATTTCATGAGTGCCCTTGAACGCCAAAAGGCAGTTGCTGAAGCCATTGAATGGGGTACAAATTCTAGGAACAAAACATAG	1152	0.4375	ILFCTDNLVKAKATPPTEPKTNKEANNNIAAQTFTFRELAAITKNFRQECLIGEGGFGRVYKGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSSGSLEDHLLDLHPRQKPLDWFTRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDKDFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRAIDNTRPTRQQNLVSWAYPVFKEPHRYGELADPLLEANYPVRSLHQAVAVAAMCLNEEPSVRPLISDVVTALSFLGTAPGNQDLAGISSPVDMPSPPQDQGTPLNVLDDDFMSALERQKAVAEAIEWGTNSRNKT	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g02451	383	Gene3D	Phosphorylase Kinase; domain 1	17	122	-	-
	Pste5g02451	383	PANTHER	OS07G0668900 PROTEIN	20	329	-	-
	Pste5g02451	383	ProSiteProfiles	Protein kinase domain profile.	46	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g02451	383	Gene3D	Transferase(Phosphotransferase) domain 1	123	330	-	-
	Pste5g02451	383	FunFam	Serine/threonine-protein kinase PBS1	123	336	-	-
	Pste5g02451	383	SUPERFAMILY	Protein kinase-like (PK-like)	32	333	IPR011009	-
	Pste5g02451	383	FunFam	Serine/threonine-protein kinase PBS1	19	122	-	-
	Pste5g02451	383	ProSitePatterns	Protein kinases ATP-binding region signature.	52	75	IPR017441	GO:0005524
	Pste5g02451	383	CDD	STKc_IRAK	52	320	-	-
	Pste5g02451	383	Pfam	Protein kinase domain	48	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g02451	383	SMART	serkin_6	46	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g02451	383	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g02451	Pste-Chr5	17053472	17055707	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g02451	14	380	Glycoside Hydrolase	AT3G07070	73.810	0.0	553

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Pste5g02451		Pkinase	3.8e-49	CL0016