Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02427 ATGCTCAGCACATTGACATTGACATTGAAAACCATCTTATGCCTCCTCGGGCTACTATTTTCCCTCGGCGCCGGCGACCCAAGCGAGGCCAAAATCCTGCGGCAGTTCCGAAACGGGTTGGACAATCCGGAGCTGCTGCCATGGCCGGAGAAGGGCGAGGACCCGTGCGGTTGGAAGTACATTTTATGCGACAGTAACAAGCGCGTGAACCAGATTCAAGCGAAGAACTTAAACCTGAGCGGACCCGTGCCGCAGAACCTGAACCAGCTAAGCGAGCTCTTCAATGTGGGCCTCCAGAAGAACAGGCTGAGCGGCCCATTACCCTCCTTCCGCGGCCTCTCTAACCTCAAATACGCCTTCCTCGACAACAACAACTTCGACTCCATCCCTTCCGATTTCTTCGATGGCCTCCTCACTCTGGAAGTGGTGGCCTTGGACCATAATAACCTCAACGCCACCACTGGCGGCTGGCACTTGCCTCAAACTCTCCAGGCCTCTACCCAGTTGACCAATTTCTCTTGTATGGCCTGCAACCTCGCCGGCCCCTTACCCGACTTTCTCGGAACCATGAACTCCCTCTCCTTTCTTAAGCTTTCCGACAACAACTTCACCGGTCAGATTCCCAATACTTTAAACAACTCCGCTCTACAGCTTCTGTGGCTCAATAACCAGCAGGGACAGGGTCTCACTGGCACTATTCATGTTCTCGCTTCTATGCTTTCGCTCACCAGTTTGTGGCTTCACGGTAACTCTTTCTCTGGGACCATTCCCGACAACATTCGGGGTTTGACTTCTTTGAAGGAACTTGATCTCAACGGAAACAACCTCGTCGGCTTCGTCCCCCAAGCTTTGTCTGACATGAAACTCGACATTCTGGATTTGAACAATAACCATTTTATGGGGCCAATTCCTCTTTTCAAGGCTGCTAAAGTCTCTTATGATTTTAATGATTTTTGTCTCCCCAAACCGGGGGCTCCTTGCGCCTTTGAGGTGCTGGCCTTGTTGGGATTTCTTCATGGGTTGAATTATCCTCAACTTCTGCTTGATTCTTGGACAGGTAATGATCCTTGTGGGGGGCATTGGTTGGGGATAAAGTGCAACCTTGATGGAAAGGTGACTATTATCAATTTGCCTAATTTTAATCTTAGTGGGAGTTTAAGTCCTTCTGTTGCCAATTTGGGTTCTCTTACTGAGATTAGGTTGGGCCGTAATAATATTACTGGTGTGATGCCTGCTAATTGGAGTAGTTTAACATCTTTAAAAATGTTGGATCTGAGTGAGAATAACATTTCTCCTCCACTCCCTGATTTTAAGACTGGATTGAAACCTATTATTGTGGGGAATCCTCTGTTCATCGGTGGACCGAAAACTACTCCTTCGGGGATCAATAACCCATCTACAGGATCTGGGAATGTTGAGCCTACATCGTCAAATTCTATTTCAAGTGATTCTCGTGAAACTAAAAAATCCAAAAGGAAAGGGTTGGTTTCTATTGTTGCTCCAATTGCAGCTGCGGCTGCTGCGGCTTTTCTTCTCATTCCACTCTATGCATATTGTTTCAGGAGGAGGAAGGGTGGCTTCCAGGCTCCAACTTCACTGGTAATTCACCCTAGGGATCCCTCTGATTCGGACAGTGCTGTGAAGATTGCTGTTGCTAATAATACCAATGGAAGCATTTCAACTTTGACAGGAAGTGGGTCTGGGAGTAGGAATAGTAGTGGAGTTGGGGAGTCTCATCTCATTGAAGCTGGAAATCTTAGGATATCGGTTCAGGTTTTGCGGAATGTAACCAAGAATTTTGCGCCTGAGAATGAGCTTGGTCGTGGTGGATTTGGAGTTGTATATAAGGGAGAGTTGGATGATGGTACTAAAATTGCGGTGAAAAGAATGGAAGCCGCTGTGATCACTAGCAAGGCCTTGGATGAATTCCAAGCTGAGATTGCGGTTCTATCGAAAGTCCGGCACCGGCATCTGGTGTCTCTTTTGGGGTATTCTATAGAGGGTAATGAAAGGATTCTAGTTTATGAATATATGCCACAAGGGGCTCTTAGTAAGCATCTTTTTCATTGGAAGAACCTTCAACTGGAACCTCTCTCTTGGAAGAGGAGGCTCAACATAGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAACCATCAAATATCTTGCTCGCTGATGATTTCAGAGCTAAAGTTTCAGATTTTGTGACGGGGAAAATCACCACTAAAGCAGATGTCTTCAGTTTCGGGGTTGTGCTAATGGAGCTCTTGACTGGATTGATGGCACTTGATGAAGACAGACCTGAGGAAAGCCAATACTTAGCCGCATGGTTCTGGCATATAAAATCAGATAAGAAGAAACTAATGGCTGCTATTGACCGGGTCCTTGATGTAAAGGAAGAAACATTTGAAAGCATCTCCATAATTGCTGAGCTAGCAGGGCACTGCACTGCCAGGGAACCAAGCCAACGGCCAGATATGGGTCATGCCGTGAATGTGCTGGCACCTCTTGTCGAGAAATGGAAACCCTTTGATGACGAAACTGAGGAGTATTCCGGTATCGATTATAGCCTTCCCCTCAACCAGATGGTGAAGGGATGGCAAGAGGCGGAAGGAAAGGACTTGAGTTATATGGACCTCGATGACAGTAAGAGTAGTATTCCTGCAAGGCCAACCGGATTCGCAGATTCTTTTACTTCAGTTGATGGCCGGTGAAACAAATTGTTTGCTGTACCCTTTTTCCTTTTGATTTTTCAATAGATGTAGATAGAATGCTCGTGTTTTTATGTCTGTCTTAAAATGTCTTGGCAAAGAGTCTAGTACCAGTGGTATATTAGTGTTTAGAGATTTGATATATCTCATTTGTATGCTTTGTATTTTCCACTATGACATTTAAGTGGTAATGGTTGTAGATAGTGAGCCACGATCAATCATCAATGAGAATGC 2985 0.4586 MLSTLTLTLKTILCLLGLLFSLGAGDPSEAKILRQFRNGLDNPELLPWPEKGEDPCGWKYILCDSNKRVNQIQAKNLNLSGPVPQNLNQLSELFNVGLQKNRLSGPLPSFRGLSNLKYAFLDNNNFDSIPSDFFDGLLTLEVVALDHNNLNATTGGWHLPQTLQASTQLTNFSCMACNLAGPLPDFLGTMNSLSFLKLSDNNFTGQIPNTLNNSALQLLWLNNQQGQGLTGTIHVLASMLSLTSLWLHGNSFSGTIPDNIRGLTSLKELDLNGNNLVGFVPQALSDMKLDILDLNNNHFMGPIPLFKAAKVSYDFNDFCLPKPGAPCAFEVLALLGFLHGLNYPQLLLDSWTGNDPCGGHWLGIKCNLDGKVTIINLPNFNLSGSLSPSVANLGSLTEIRLGRNNITGVMPANWSSLTSLKMLDLSENNISPPLPDFKTGLKPIIVGNPLFIGGPKTTPSGINNPSTGSGNVEPTSSNSISSDSRETKKSKRKGLVSIVAPIAAAAAAAFLLIPLYAYCFRRRKGGFQAPTSLVIHPRDPSDSDSAVKIAVANNTNGSISTLTGSGSGSRNSSGVGESHLIEAGNLRISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAAVITSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSKHLFHWKNLQLEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLADDFRAKVSDFVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDRVLDVKEETFESISIIAELAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPFDDETEEYSGIDYSLPLNQMVKGWQEAEGKDLSYMDLDDSKSSIPARPTGFADSFTSVDGR 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02427 917 PANTHER OSJNBA0070M12.3 PROTEIN 12 748 - -
Pste5g02427 917 SMART LRR_typ_2 113 136 IPR003591 -
Pste5g02427 917 SMART LRR_typ_2 417 439 IPR003591 -
Pste5g02427 917 SMART LRR_typ_2 263 286 IPR003591 -
Pste5g02427 917 SMART LRR_typ_2 393 416 IPR003591 -
Pste5g02427 917 SMART LRR_typ_2 239 262 IPR003591 -
Pste5g02427 917 Gene3D Ribonuclease Inhibitor 330 449 IPR032675 -
Pste5g02427 917 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Pste5g02427 917 Pfam Leucine rich repeat N-terminal domain 330 367 IPR013210 -
Pste5g02427 917 FunFam receptor protein kinase TMK1 562 677 - -
Pste5g02427 917 Pfam Leucine rich repeat 381 430 IPR001611 GO:0005515
Pste5g02427 917 Pfam Leucine rich repeat 241 299 IPR001611 GO:0005515
Pste5g02427 917 ProSiteProfiles Protein kinase domain profile. 600 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g02427 917 FunFam Receptor-like kinase TMK4 27 324 - -
Pste5g02427 917 Gene3D Ribonuclease Inhibitor 26 323 IPR032675 -
Pste5g02427 917 SMART serkin_6 600 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g02427 917 MobiDBLite consensus disorder prediction 457 483 - -
Pste5g02427 917 Pfam Protein tyrosine and serine/threonine kinase 603 748 IPR001245 GO:0004672|GO:0006468
Pste5g02427 917 ProSitePatterns Serine/Threonine protein kinases active-site signature. 725 737 IPR008271 GO:0004672|GO:0006468
Pste5g02427 917 MobiDBLite consensus disorder prediction 456 488 - -
Pste5g02427 917 Gene3D Transferase(Phosphotransferase) domain 1 750 867 - -
Pste5g02427 917 SUPERFAMILY Protein kinase-like (PK-like) 576 847 IPR011009 -
Pste5g02427 917 ProSitePatterns Protein kinases ATP-binding region signature. 606 628 IPR017441 GO:0005524
Pste5g02427 917 Gene3D Phosphorylase Kinase; domain 1 565 677 - -
Pste5g02427 917 Gene3D Transferase(Phosphotransferase) domain 1 678 749 - -
Pste5g02427 917 SUPERFAMILY L domain-like 26 305 - -
Pste5g02427 917 MobiDBLite consensus disorder prediction 893 917 - -
Pste5g02427 917 FunFam Leucine-rich repeat receptor-like kinase 329 453 - -
Pste5g02427 917 SUPERFAMILY L domain-like 330 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02427 Pste-Chr5 16833408 16837093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02427 74 852 Receptor kinase-like Gene Family AT5G07280 31.513 2.42e-70 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pste5g02427 PK_Tyr_Ser-Thr 2.4e-30 CL0016