Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02424 GGAAACACCCATAAGTCGGCATTACAAACACCGTATTTCAGAACCTGGAAGCTCACACATTTCTTCTACTCCAAAAAATCGCTTCTTTTCTGGCTCCTGCTATTCCAAACAAGCAAGTCCTTAACCGCGAACTTTCCAGAAGATGGTGGTGATAGAGCAGGAAGAGAGCCAACATGGAAATGCGAATCCCTCCAACGCCGGCGCCGGCCACGGAAACGACGCTTCCGACGGCTTCGAAACCGCCAGCGACGCGGATCTCGACAGTGACGGCGAGGGAGGTGGAGGCTCCGCGGCCATCCAGGAAGAACACCAGCAGAAGCAACAGACGGAGCAAGAGACCGAGCACGATGTTCCTCGGAGCACCGAATCATCCGAGAATAATGCCCTGGTTAATGACGAAGAATCGAGACAGAAAGCATTGGATCAAGCAAATGAAGCTAAGGTAGAAGGGAACAAGCTTTTTGCAGATGGGAAGTATGAAGAGGCATTATCACAATATGAACTTGCTTTACAAGTAGCACCAGACATGCCTTCGTCTGTTGAAATACGATCAATATGCCATTCAAACCGTGGTGTGTGCTTTCTGAAACTGGGAAAATATGATAACACAATTAAAGAATGCACCAAAGCATTAGAATTGAATCCTGTGTACGTTAAAGCTTTGATAAGAAGAGGAGAAGCTCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAAATCTTAGAAATTGATCCTTCAAATGATCAAGCAAGGAAAACCATTCGGCGACTAGAACCCATTGCTGCAGAAAAACGGGAAAAGATGAAGGAAGAAATGATTGGAAAACTGAAAGAAATGGGCAATTCTGTTCTGGGTCGTTTTGGGATGAGTGTAGACAACTTCAAAGCAGTCAAAGATCCGAACACGGGTTCCTATTCTATCTCATTCCAACGCTAATTTACGTAGAGCAAAGTCATAACAGCAGTAAGCAAGAAAGAAGCAGTCTAAAGTGATACAGGCAATGATGGAATTCTGAAGTACCAAGGGAGCTGAGTATTGTTTGATGGATGTCATGGTGTATTAATCATATGGAAATACAATCGTGAAAGTTGAATGGAATTTGTAAGCTTTTTTGGGTCATACCCTTCTGTTTTTTTATCATTGGGTCATTCTGCACCAGTTTCACTATGAATATGATTTTTGTTTTAGAAATCTTAATGTACTCATATGATCCATACAGATATTTTCTGGTACCATGATGTTTATAAGTTTTGGGAATATACGTTATATGTGATAGTCAACACCTAGAGCATTAATAATTATTTTTGTTTCTTTCTGCTTCTGCTATGCTTTATACTAGTG 1354 0.4165 MVVIEQEESQHGNANPSNAGAGHGNDASDGFETASDADLDSDGEGGGGSAAIQEEHQQKQQTEQETEHDVPRSTESSENNALVNDEESRQKALDQANEAKVEGNKLFADGKYEEALSQYELALQVAPDMPSSVEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYVKALIRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTIRRLEPIAAEKREKMKEEMIGKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02424 268 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 33 268 - -
Pste5g02424 268 ProSiteProfiles TPR repeat profile. 96 129 IPR019734 GO:0005515
Pste5g02424 268 ProSiteProfiles TPR repeat profile. 171 204 IPR019734 GO:0005515
Pste5g02424 268 SUPERFAMILY TPR-like 92 214 IPR011990 GO:0005515
Pste5g02424 268 MobiDBLite consensus disorder prediction 58 74 - -
Pste5g02424 268 ProSiteProfiles TPR repeat profile. 137 170 IPR019734 GO:0005515
Pste5g02424 268 Gene3D Tetratricopeptide repeat domain 51 232 IPR011990 GO:0005515
Pste5g02424 268 Pfam Tetratricopeptide repeat 172 204 IPR013105 -
Pste5g02424 268 Coils Coil 82 102 - -
Pste5g02424 268 SMART tpr_5 137 170 IPR019734 GO:0005515
Pste5g02424 268 SMART tpr_5 171 204 IPR019734 GO:0005515
Pste5g02424 268 SMART tpr_5 96 129 IPR019734 GO:0005515
Pste5g02424 268 Pfam Tetratricopeptide repeat 139 168 IPR001440 GO:0005515
Pste5g02424 268 MobiDBLite consensus disorder prediction 8 22 - -
Pste5g02424 268 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02424 Pste-Chr5 16827466 16832234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02424 61 227 Calmodulin-binding Proteins AT3G25230 35.359 2.04e-18 82.8