Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02419 CCATTTCCTCCTTCTTCCTTCTCACTCTCACAACACAACGAAATTCAACGTCACCAACAACGTAGAGTGTGTGTGTTTCTTCACAAACTGCGCAAAACCACGCAGAGAAAGTTGAAGAAGCACAATGAAGGTGCTCTCTACAAATTTCTTCACTCTCACTCTCACCGTGGCGCTTCTTTTAGCTACCACCCACGCTTTCAATCACAATGAGACGCAGAAACATCAAGCATCCAAATCAAGGGATGTGGTTGAAGAAGAGATATTGCCAGGGAGCTTGATGAATTCGTCAATGGCAGAAAGGTCAGTGGGTGCTTTGAATGAACATGCAGTTGATAATCCTGAGGAGATTGCTTCCATGGTGAATGAGAGCATACGCAATTACACAGCGAGAAGGAATCTCAATTTCTTCTCATGTGGGACCGGGAATCCAATAGACGACTGCTGGCGGTGCGACAAGCGGTGGTACCTCCGGCGAAAGCGGTTAGCGAACTGCGGCATCGGTTTCGGGCGCAACGCCATCGGCGGGCGCGACGGACGATACTACGTGGTTTCAGACCCAAGCGACAACGACCCAGTGAACCCAAAACCTGGGACGCTCCGCCACGCCGTGATCCAAGACCGCCCCCTGTGGATCGTGTTCAAGAGAGACATGGTAATCACACTAAAACAAGAACTCATTATGAACAGCTTCAAAACCATCGACGGTCGCGGCGTGAATGTCCACATAGCTTACGGTGCATGCATCACCATCCAATTCGTGACCAATGTCATCATCCACGGCCTCCATATCCATGATTGCAAGCCCACCGGGAATGCCATGGTTCGCAGCTCCCCCTCTCACTATGGTTGGAGGACCATCGCTGATGGGGATGGTATCTCTATCTTTGGCTCCAGTCACATTTGGATCGACCATAACTCGCTTTCAAATTGCGCCGATGGACTTGTTGATGCTGTTATGGGCTCCACTGCTATTACCATCTCCAACAACTACTTCACCCACCACAACGAGGTTATGCTACTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTAACCATTGCTTACAATCATTTTGGGGAGGGTCTTATCCAGAGAATGCCCAGGTGCAGGCATGGGTATTTCCATGTGGTTAACAATGACTATACCCAGTGGGTAATGTATGCTATTGGAGGCAGTGCTAATCCTACAATTAATAGCCAGGGCAACAGATATCTTGCTCCTCAGAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTGGATACAGGGGCATCCGTATGGAAAAGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTCAATGGAGCTTTTTTCACTTCATCCGGAGCAGGAGCAGCTGCAAGCTATGCCAGAGCCTCAAGTTTGGGGGCAAAATCATCTTCTTTGGTTGGTACCATCACCTCTGGAGCTGGTGTTCTTGGCTGCCGCAGGGGTGTCATGTGTTAATATCAAACGCACCACAACCAAAGGAAAATCCAATTCAAACAACCAAAGAATACTTAAAAAAAGAGGCAGAGAAAAGCATAAAGGAAAGGAAGAAAGAAAAAAGTTTTAATTCTTTTTCCTCTTATTATTGAGTTGTTCTAAATCTACTGATTGAGTTTGCACACGATCACACCCGTTGTTTGTCTTATCACTAGTTAGATATCCGGGGGGGCACTGTGTACATTTTATGTGAACTGTTATCAAAATTGATAACAATGATTGCTTAAAAGGCATTTCCCACTACCTGTGCGAGAGAGTTCCCCGTAATTTTCCAAGGGAAACAAACTCTATTATTTCTCTCTTCCCCTTAGTTTCTTTCTGTCTTCTTCCCATGTATCCTTGTATGGTCTTGAGACATTGTCCATTAGTACACCTCAATTATGTTTGTATCCATTTAGTAAACTCTTGATTTCTCCCTAATTAAAGGGGCAAAAAGGGAGGGAAAAAAAAAGGGAATGTATTACTGAAATAGTTGGTTGTGTATTTGTTTAAATCAGAATATTATCATCTTTTACTTATGCCTTTGTTATGTTGA 2048 0.4526 MKVLSTNFFTLTLTVALLLATTHAFNHNETQKHQASKSRDVVEEEILPGSLMNSSMAERSVGALNEHAVDNPEEIASMVNESIRNYTARRNLNFFSCGTGNPIDDCWRCDKRWYLRRKRLANCGIGFGRNAIGGRDGRYYVVSDPSDNDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTIADGDGISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTQWVMYAIGGSANPTINSQGNRYLAPQNPFAKEVTKRVDTGASVWKSWNWRSEGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTITSGAGVLGCRRGVMC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02419 449 PANTHER PECTATE LYASE 18-RELATED 65 446 IPR045032 GO:0030570
Pste5g02419 449 Pfam Pectate lyase 184 364 IPR002022 -
Pste5g02419 449 Gene3D - 100 442 IPR012334 -
Pste5g02419 449 SMART amb_all 175 372 IPR002022 -
Pste5g02419 449 FunFam Pectate lyase 100 442 - -
Pste5g02419 449 SUPERFAMILY Pectin lyase-like 78 443 IPR011050 -
Pste5g02419 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Pste5g02419 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Pste5g02419 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Pste5g02419 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Pste5g02419 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Pste5g02419 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Pste5g02419 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Pste5g02419 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02419 Pste-Chr5 16784025 16790521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02419 34 449 Polysaccharide Lyase AT4G13710 77.123 0.0 681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02419 5 16784025 16790521 Pste5g02419 5 16784025 16790521 ECH