Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02417 GCAAAGGCCAAAGGTGAGCACAAGAAAAGCAACTAAACAATAACGAGAGCTACTGTAGCTAGAATAGTCATCATGTCAGAACAGAGAAAGTCAAGAGCTTCAAAGTTCAGTGAGAATGAGATTAATGATCTTGTGTGTAGATTACAAGTTTTGCTTCCGCAGGTGAACCAAAGAGGCAACTCAAGGCAATCAGCGTCCAAGATTTTGCAGGAAACCTGTTGTCACATTAGAAGGCTGCAGGAAGAGGTGGAACAGCTCAGTGAGCGGCTATCAGAGCTCATGGATTCTGTGGATATCAGTGACATTGACAGAAGAACTTTGCAAAGTTTTTTGCATCAATAACTGTTGGTCCCTTTTCCACTTATGTTTCTTCCTCAGTCTAGGTTATTGCATTGTCTTGGAGCCTTTCCAATCCTGCAATTATAATAACATTCCATCTCTTTG 444 0.4144 MSEQRKSRASKFSENEINDLVCRLQVLLPQVNQRGNSRQSASKILQETCCHIRRLQEEVEQLSERLSELMDSVDISDIDRRTLQSFLHQ 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02417 89 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
Pste5g02417 89 Coils Coil 45 72 - -
Pste5g02417 89 PANTHER DNA BINDING PROTEIN 1 88 IPR044172 -
Pste5g02417 89 Gene3D - 14 87 IPR036638 GO:0046983
Pste5g02417 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 73 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02417 Pste-Chr5 16757811 16761778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02417 2 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 50.000 3.55e-18 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g02417 HLH 0.00014 No_clan