LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g02409	CAGCTTTCTCAGAAAAGAGAGCTTCTTTCTTTGAACTTCACACTACCCACACTTCAACCTTTCCCTCTCTCTCTCTCTTTCTTTCTCTTTCTGCTTTGTAGTTCATGGAGTTTCTAAAGCCTTTCTTCTCTCTCCACATTTCCATGTCCTTGTTCTTCTTCCTCCTCTTTTGCTTCTGCAAAGCCAGTACTACCTCCACAAAGTCATTGTCCCCTTCTTCACCCTCCACTTCCTCTGATGTTGAACTTCTCTTGGGAAAAATCAAAGCTTCACTGCAAGGTAACTCTGACAACCTTGTTTTGTCTTCATGGAACTCCTCTATCCCACTTTGTCAGTGGAGAGGCCTCAAATGGATCTTCTCCAATGGCATTCCTCTCTCATGCACTGACTTGTCCTCTCCACAATGGACCAATCTTACACTCCACAAAGACCCTTCTCTTCACTTGCTTTCTCTTCGGCTCCCTTCTGCTAACCTCTCTGGTTCTCTCCCCAGAGAGCTTGGGGGGTTCCCTATGCTTCAAAGTCTCTACCTTAACATAAATTCATTGCAGGGAACCATCCCTCTTGAGCTTGGCTATAGCTCCTCCCTCTCTGACATTGATTTGGGTGATAATATCTTAAGTGGGGTAATTCCCCCTTCCATTTGGAACTTGTGTGAGAAGCTTGTTTCCCTTAGGCTCCATGGTAATTCACTATCTGGGTCTGTTTCTGAGCCTGCATTGCCTGACTCATCTTGCAAGAATTTGCAGTTGCTTGATTTGGGTGGCAACAAGTTCTCTGGGAGTTTGCCTGAGTTCATCACAAAGTTTGGTGGGCTAAAGCAGCTTGACTTGGGGAACAACATGTTTATGGGTACAATTCCTCAAAGCCTGGTTGAGCTGAGGCTTGAAAAATTGAATCTTTCCCACAATAACTTCAGTGGGGTTTTGCCTTTCTTTGGAGAATCTAAGTTTGGTGTGGATTCTTTTGAGGGGAATAGCCCTGGCTTGTGTGGACCACCTTTGGCAAGCTGTGCTAGGACCTCTGCACTGAGTTCTGGTGCAGTTGCTGGCATTGTTATTAGTCTGATGACAGGTGCTGTGGTTTTGGCTTCTTTGCTGATTGGGTATATGCAGAACAAGAAGAGGAAGGGAAGTGGAGAGAGTGAAGATGAGTTGAATGAAGAAGAGGAAGATGAAGAGAATGGTGGTAATGCTATTGGTGGAACTGGTGAGGGGAAGCTTATGTTATTCCCTGGAGGTGATAATTTGACATTAGATGATGTGTTGAATGCAACTGGGCAAGTTTTGGAGAAGACTTGTTATGGGACTGCTTATAAGGCTAAGCTTGCTGATGGAGGCACCATTGCTTTGAGGTTGTTGAGAGAGGGTAGCTGCAAAGATAGGGCTTCATGCTTGGCTGTTATAAAGCAATTGGGAAAAATTCGCCATGAGAATTTGATTCCTTTGAGAGCTTTCTATCAGGGGAAGAGAGGGGAAAAACTACTTATTTATGACTACCTGCCACTCAGAACCCTTCATGATCTTTTACATGAATCTAAAGCTGGAAAACCTGTGCTGAACTGGGCAAGGCGACACAAGATTGCATTGGGTATAGCAAGAGGGCTAGCATATCTTCATACAGGACTAGAAGTCCCAGTCACTCATGCAAATGTAAGGTCCAAGAATGTGCTTGTGGATGACTTCTTTGCAGCCAGGCTCACGGATTTTGGCCTTGACAAGCTGATGATTCCTTCCATAGCCGACGAAATGGTGGCGCTTGCCAAGACCGACGGCTACAAGGCTCCCGAGCTTCAAAGAATGAAAAAATGCAACTCCAGGACAGATGTTTATGCATTTGGCATACTATTACTTGAAATCTTGATTGGGAAGAAACCCGGAAAGAATGGAAGAAATGGAGAGTATGTGGACTTGCCTTCCATGGTGAAAGTGGCGGTTTTGGAGGAGACAACAATGGAAGTGTTTGATGTGGAACTTTTGAAAGGTATAAGAAGTCCTATGGAAGATGGTTTGGTGCAGGCACTGAAGCTAGCAATGGGGTGCTGTGCACCAGTGGCATCTGTTAGGCCAAGCATGGAAGAAGTTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAACAGGTCTGCATTATATAGCCCCACAGAAACAAGAAGTGGAAGTGTTACCCCATTTTGAGCCTTTTTCAATTCAACATGCTCCATCAAACTATTGATTTTTACTTACTATATACGTTGTGTTTCCTTCTTCTCATCTGAATGTGAGAGTAGTTTATGATGGTCTAGAGAATGTTGTAATTTTTGCTTTTGAGATAACAATTTGCATTAGGTAGTCCTTATTGTTTAAATCAAATATAGTTACACAATTATGCAAATTCTTGCTTCTAGAAATTGTGCAGTGTTTCAACTACCTTCTTAAATCAAAACATAATTCTGCACTATATCTTTATTATTATTAAATCCTTTGCATGTATTTTTCCCCCCCTCTCTTTTCATCTCTATAAAAAATAATAGAATTTC	2515	0.429	MEFLKPFFSLHISMSLFFFLLFCFCKASTTSTKSLSPSSPSTSSDVELLLGKIKASLQGNSDNLVLSSWNSSIPLCQWRGLKWIFSNGIPLSCTDLSSPQWTNLTLHKDPSLHLLSLRLPSANLSGSLPRELGGFPMLQSLYLNINSLQGTIPLELGYSSSLSDIDLGDNILSGVIPPSIWNLCEKLVSLRLHGNSLSGSVSEPALPDSSCKNLQLLDLGGNKFSGSLPEFITKFGGLKQLDLGNNMFMGTIPQSLVELRLEKLNLSHNNFSGVLPFFGESKFGVDSFEGNSPGLCGPPLASCARTSALSSGAVAGIVISLMTGAVVLASLLIGYMQNKKRKGSGESEDELNEEEEDEENGGNAIGGTGEGKLMLFPGGDNLTLDDVLNATGQVLEKTCYGTAYKAKLADGGTIALRLLREGSCKDRASCLAVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHESKAGKPVLNWARRHKIALGIARGLAYLHTGLEVPVTHANVRSKNVLVDDFFAARLTDFGLDKLMIPSIADEMVALAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKNGRNGEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMEEVVRQLEENRPRNRSALYSPTETRSGSVTPF	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g02409	689	SUPERFAMILY	Protein kinase-like (PK-like)	393	665	IPR011009	-
	Pste5g02409	689	ProSiteProfiles	Protein kinase domain profile.	389	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g02409	689	MobiDBLite	consensus disorder prediction	670	689	-	-
	Pste5g02409	689	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	109	201	-	-
	Pste5g02409	689	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	18	668	IPR046959	-
	Pste5g02409	689	MobiDBLite	consensus disorder prediction	341	365	-	-
	Pste5g02409	689	Gene3D	Phosphorylase Kinase; domain 1	379	465	-	-
	Pste5g02409	689	Gene3D	Ribonuclease Inhibitor	210	307	IPR032675	-
	Pste5g02409	689	Gene3D	Transferase(Phosphotransferase) domain 1	468	677	-	-
	Pste5g02409	689	Pfam	Protein tyrosine and serine/threonine kinase	393	664	IPR001245	GO:0004672\|GO:0006468
	Pste5g02409	689	FunFam	Leucine-rich repeat receptor-like protein kinase	211	303	-	-
	Pste5g02409	689	SUPERFAMILY	L domain-like	82	277	-	-
	Pste5g02409	689	Pfam	Leucine rich repeat N-terminal domain	50	80	IPR013210	-
	Pste5g02409	689	Pfam	Leucine rich repeat	213	271	IPR001611	GO:0005515
	Pste5g02409	689	Gene3D	Ribonuclease Inhibitor	44	209	IPR032675	-
	Pste5g02409	689	MobiDBLite	consensus disorder prediction	665	689	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g02409	Pste-Chr5	16662805	16665992	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g02409	10	689	Receptor kinase-like Gene Family	AT3G24660	73.715	0.0	946

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Pste5g02409		PK_Tyr_Ser-Thr	1.6e-25	CL0016