Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02403 AAAAGAACAGAACCCCGAGGCAGAGGGAGTGGTGCTTGTTCACTCAAAATCGTATAAAAAATATCTTGTCTCCTTTCTTGTTTTACTACAAAGCAAGTATAATAGTTAAGCCTAGAAACTATGGTGACACCATAGTGAGTTCAAGCGAGTAGCAAGTGAGAGAGAAAAAAAAAAGAGCGACCCAATGCAAAACCAAGAGTTGATAACTTGATATGATATGCTTATGGTTGAGTTTTTGAGGGAATTACCAATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAACTTTCATCACAAACCATCACCTATACCACCTTCTCCATGTTTTTCTCCTTACACTTCTTGTTCCTCTTTCCTTTGCTGCTGCAAATGATGAAGTTAGTGCATTGGTTTCATGGATGCAAAGCTCCTCCAATGTTCCTTCAGCCTTGTCTAGTTGGAACCCTTTGGACTCCAATCCTTGCAATTGGTCTTACATCAAATGCTCCTCAGCAAGCCTTGTCACTGAGATAACCATTCAAAATGTTGAGTTAGCCCTTCCCTTCCCTTCAAAAATCTCATCCTTTCCTTTTCTTCAAAAGCTTGTTATTTCGGGGGCTAACCTCACTGGGGCAATCTCACCTGACATTGGAAACTGTCCTGAGCTTATAGTCCTTGACCTTAGATCAAATAGTCTTGTGGGTGGGATTCCTTCAAGTATTGGGAGGCTTAAATACCTCCAAAACTTGAGCTTGAACTCTAACTATCTCATTGGGCCAATTCCAAGTGAGCTAAGTGATTGTGTCAATCTCAAGAACCTTGACATCTTTGATAACAACCTTAGTGGGGATCTTCCAGTGGAGCTGGGAAAGCTGTCAAATATTGAAGTTATAAGAGCAGGAGGGAACAGTGGCATTGTTGGGAAGATTCCAGATGAGTTGGGAGATTGCAGGAATTTGTCAGTGTTGGGTCTTGCTGACACAAATATTTCTGGTTCACTGCCTGCTTCACTGGGTAAGCTAAGCATGCTTCAGACTTTATCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGTTCAGAGCTTGTGAACTTGTTTTTGTATGAGAATAATCTCTCTGGCTACCTGCCATGGGAGCTTGGTAAGCTTCAGAAGCTGGAAAAGATGCTGCTGTGGCAAAACAATTTTGTTGGGGGCATTCCTGAGGAAATTGGTAACTGCAGAAGCTTGAAGATTCTTGATGTCTCCTTAAACTCTTTCTCTGGTGAAATACCTCAAAGTTTGGGGCAGCTCACAAATCTTGAAGAGCTTATGCTGAGTAACAATAACATCTCTGGTTCAATACCTCTATCTCTATCCAATCTCACAAACCTCGTACAGTTGCAGTTGGATACAAATCAGATATCAGGTTCAATTCCACCTGAGCTTGGAAGCTTGACAAAGTTAACAGTGTTTTTTGGTTGGCAGAACAAACTTGAAGGAGGCATTCCAGAATCATTGGGAGGTTGTACAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGTCTGTTTAAACTTCAAAATTTAACAAAGCTTCTGCTAATCTCTAATGATATTTCTGGCCACATTCCTCCTGAGATTGGCAACTGCAGTTCTCTCATCCGCCTCCGGCTTGTAGCCAACAGAATCATTGGAGAGATACCAAAAGAAATTGGCCTCCTCAATAGCCTGAGTTTCCTTGATCTGTCTGAAAATCACCTTACTGGATCAGTACCAATTGAGATTGGAAATTGTAAAGAACTGCAAATGCTGAATCTAAGCAATAACTCCCTTTCTGGTGCTTTGCCTAGTTATTTGTCTTCTCTCACAAGGCTAGAGGTATTGGATGTATCAGTGAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGCCAACTCACTTCACTTCTTAGAGTCATCCTAAGCAAAAACTCTTTCTCTGGGTCAATTCCCTCCTCACTTGGGCAATGTTCAGGTCTTCAACTACTAGACCTTAGCAGCAACAATTTCTCAGGGAGCATCCCACCAGAACTGCTTCAAATTGAAGCGCTTGATATTTCTCTAAATTTGAGTCATAATGCACTATCTGGAGTGATCCCACCTGAGATTTCTTCTCTGAACAAACTGTCGGCTCTAGACCTTTCACACAACAATCTTGAAGGTGACTTGATGGCATTTTCAACACTTGAAAATCTTGTTTCTCTGAACATTTCCTACAACAAGTTCACTGGTTATCTACCAGATATCAAGTTATTCCACCAACTATCAACAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCTAGTGGTCATGATTCATGTTTTAACAATGCTGCGATGACCAAAAGGCTTGATGGCTCTAATTCTAAGAGGTCAGAGATCATCAAATTGGCCATTGGATTGCTCAGTGCCTTGATTGTTGCAATGGCAATCTTTGGAGTTGTGACTGTCTTTCGAGCAAGGAAAATGATTCAAGCAGACAATGATTCTGAGATGGGAGGGGATTCATGGCCTTGGCAGTTCACTCCATTCCAAAAGGTAAATTTCTCTGTGGAGCAAGTCTTAAAGTGTTTGGTGGAATCCAATGTGATTGGAAAAGGGTGTTCAGGGATTGTTTATCGCGCTGAAATGGAAAATGGGGATGTCATTGCTGTGAAAAGGCTATGGCCAAACACAATAGCTGCAAGATATGATAGTCAAAGTGACAAGTTAGCAGTGAATGGAGGGATGCGTGATTCCTTTTCAGCTGAGGTAAAAACTCTTGGTTCCATTCGTCACAAGAACATAGTCAGATTCTTAGGTTGCTGTTGGAACAGAAATACAAGATTGCTTATGTATGATTACATGCCAAATGGAAGTCTAGGAAGTCTACTTCATGAAAGAAGTGGCAACTGCTTAGAATGGGACATGAGGTTTCGGATAATACTAGGAGCAGCTCAAGGTGTGGCTTATTTGCACCATTATTGTGTTCCTCCTATTGTTCACAGGGACATTAAAGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATTGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCTCGATCTTCTAGCACACTGGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGATACATGATGAAGATAACAGAGAAAAGTGACGTTTATAGCTATGGTATTGTTGTATTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTTCACATTGTTGATTGGGTAAGACAGAAAAGAGGTGGAGTAGAAGTGCTAGATGAAAGCTTGAGAGCTCGGCCGGAATCCGAAATTGAGGAAATGTTGCAGACCTTAGGAGTGGCCTTGTTGTGTGTAAACTCCAGCCCAGATGACAGGCCAACCATGAAAGATGTGGTAGCAATGATGAAGGAAATTAGACAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTGATTCATCTTCTACAAATGATCAACAAGAAAGAAATCATCCCAATGAAGAAAGAAATCATGCCAATGAACAAAGAAATCATGCCAATGAAGAACCCATGTCAATGATAAGCACTATCAATAGCAATTCAAATATGCATCTTCATTACTCTCCTCATCTACCTCAAACACCAAAGTAACTTTCTAAATAGTCAATAATACCAATGTAACTAGGCAACTAAGATTTCCTTTGGTTTCTATGCTCTTGTCATTAATTAATTCTACCTCATATTTTTGGTTTGCTTGTGTATAAGGATAAAG 3833 0.4096 MLMVEFLRELPMSMPRQALSNQNHNQMSRQTFITNHHLYHLLHVFLLTLLVPLSFAAANDEVSALVSWMQSSSNVPSALSSWNPLDSNPCNWSYIKCSSASLVTEITIQNVELALPFPSKISSFPFLQKLVISGANLTGAISPDIGNCPELIVLDLRSNSLVGGIPSSIGRLKYLQNLSLNSNYLIGPIPSELSDCVNLKNLDIFDNNLSGDLPVELGKLSNIEVIRAGGNSGIVGKIPDELGDCRNLSVLGLADTNISGSLPASLGKLSMLQTLSIYSTMLSGEIPPEIGNCSELVNLFLYENNLSGYLPWELGKLQKLEKMLLWQNNFVGGIPEEIGNCRSLKILDVSLNSFSGEIPQSLGQLTNLEELMLSNNNISGSIPLSLSNLTNLVQLQLDTNQISGSIPPELGSLTKLTVFFGWQNKLEGGIPESLGGCTSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGHIPPEIGNCSSLIRLRLVANRIIGEIPKEIGLLNSLSFLDLSENHLTGSVPIEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLEVLDVSVNNFSGEVPMSIGQLTSLLRVILSKNSFSGSIPSSLGQCSGLQLLDLSSNNFSGSIPPELLQIEALDISLNLSHNALSGVIPPEISSLNKLSALDLSHNNLEGDLMAFSTLENLVSLNISYNKFTGYLPDIKLFHQLSTTDLAGNQGLCPSGHDSCFNNAAMTKRLDGSNSKRSEIIKLAIGLLSALIVAMAIFGVVTVFRARKMIQADNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPNTIAARYDSQSDKLAVNGGMRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDMRFRIILGAAQGVAYLHHYCVPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLDSSSTNDQQERNHPNEERNHANEQRNHANEEPMSMISTINSNSNMHLHYSPHLPQTPK 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02403 1164 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 897 1107 - -
Pste5g02403 1164 Pfam Leucine rich repeat 342 402 IPR001611 GO:0005515
Pste5g02403 1164 ProSitePatterns Protein kinases ATP-binding region signature. 812 834 IPR017441 GO:0005524
Pste5g02403 1164 SUPERFAMILY L domain-like 458 717 - -
Pste5g02403 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 941 953 IPR008271 GO:0004672|GO:0006468
Pste5g02403 1164 SMART serkin_6 806 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g02403 1164 SMART LRR_typ_2 581 605 IPR003591 -
Pste5g02403 1164 SMART LRR_typ_2 365 388 IPR003591 -
Pste5g02403 1164 SMART LRR_typ_2 389 413 IPR003591 -
Pste5g02403 1164 SMART LRR_typ_2 437 461 IPR003591 -
Pste5g02403 1164 SMART LRR_typ_2 677 699 IPR003591 -
Pste5g02403 1164 SMART LRR_typ_2 509 533 IPR003591 -
Pste5g02403 1164 ProSiteProfiles Leucine-rich repeat profile. 367 390 IPR001611 GO:0005515
Pste5g02403 1164 FunFam Predicted protein 214 312 - -
Pste5g02403 1164 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 789 896 - -
Pste5g02403 1164 Coils Coil 1112 1132 - -
Pste5g02403 1164 Gene3D Transferase(Phosphotransferase) domain 1 897 1114 - -
Pste5g02403 1164 MobiDBLite consensus disorder prediction 1106 1137 - -
Pste5g02403 1164 SUPERFAMILY RNI-like 130 503 - -
Pste5g02403 1164 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 313 421 - -
Pste5g02403 1164 ProSiteProfiles Protein kinase domain profile. 806 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g02403 1164 MobiDBLite consensus disorder prediction 1116 1133 - -
Pste5g02403 1164 PRINTS Leucine-rich repeat signature 654 667 - -
Pste5g02403 1164 PRINTS Leucine-rich repeat signature 512 525 - -
Pste5g02403 1164 Gene3D Phosphorylase Kinase; domain 1 790 896 - -
Pste5g02403 1164 FunFam Nuclear pore complex protein NUP107 58 213 - -
Pste5g02403 1164 Pfam Protein tyrosine and serine/threonine kinase 809 1087 IPR001245 GO:0004672|GO:0006468
Pste5g02403 1164 Pfam Leucine rich repeat N-terminal domain 58 98 IPR013210 -
Pste5g02403 1164 SUPERFAMILY Protein kinase-like (PK-like) 789 1089 IPR011009 -
Pste5g02403 1164 Gene3D Ribonuclease Inhibitor 422 726 IPR032675 -
Pste5g02403 1164 Gene3D Ribonuclease Inhibitor 270 421 IPR032675 -
Pste5g02403 1164 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 337 1091 - -
Pste5g02403 1164 Gene3D Ribonuclease Inhibitor 168 265 IPR032675 -
Pste5g02403 1164 Gene3D Ribonuclease Inhibitor 60 167 IPR032675 -
Pste5g02403 1164 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 439 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02403 Pste-Chr5 16577888 16582125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02403 64 1105 Receptor kinase-like Gene Family AT5G56040 48.110 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste5g02403 PK_Tyr_Ser-Thr 8e-40 CL0016