Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02400 ATGGATTGTGAAGTTGAATTACAAGGGGGAGATCTGCATGCAGGGGTGATAACTGAAGCAAACCCTGTTGGCTTTGGCACCATGGAAGACTCGCACGCTTTGGCGGTTTCAGAGAGAGATATGTGGCTGAACAGTGACCAAGACGAGTTCCTAGGAGTCAATGATGCTTCCATGTTCTACGCTGATTTCCCTCCTCTCCCTGATTTTCCTTGCATGTCATCATCTTCATCTTCATCTTCTGCTCCACCACTTCCTGCGAAAACCATGGCATGTTCCACAACAACCACCACCACTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCATGGGTCATGTTGAGGTCTGATGTTGAGGAAGATGCGGAGAAAAACCATTGCAACCACTACATGCATGACCAACTTGATGCAACAGCTTTGTCTTCCACTGCTTCCATGGAGATATCTCAACAGCACAACCCCGATCCTGCACTTGGTGGCACTGTTGGAGAGTGCATGGAGGATGTCATGGACACTTTTGGGTACATGGAGCTTCTAGAGTCCAATGATTTCTTCGACCCTGCCTCTATCTTCCAGGAGGATAATGAAGATCCTTTAGTGGAATTTGGCACACTTGAGGAACAGGTGCCACTGCATGATGAGCAACATGCAATGGTGCATCAGAAGGGGAAAGCAGATGAGGAAGATCACCAGGTTCCTGTGTGTGAAGAGATCCATGGAGAGGAAGAAGGTGGTGATGGTGTTGGAGTAGTAGATGATGAAATGAGTAACGTGTTCTTGGAGTGGCTTAAGAGTAACAAGGATAGCGTCTCTGCTAATGACTTGAGGAATGTGAAGCTCAAGAAGGCGACGATCGAAAGCGCAGCGAGGCGGTTAGGGGGAGGAAAAGAAGCCATGAAACAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAGCGGCGCAAGGAGAATAGTGGTAGTATTAGCACTGTACTTCAGGGACAGTTTCAGGATCCTAGTGTGCAGAACACACACACTGGTTCATTTGCACCTGAACCAAACTCATGTTTCAACAACCAGACACCCTGGTTGAGTCCTCAGCCTTTTGGGACAGACCAGAATCCTCTTATGGTCCCTTCACAGCAATTTCCACAACCCATGGTTGGGTATGTGGGTGACCCTTACACTAGTGGTGCCGCTTCAAATAACATCACAGCCACTCATAACCATAACAACAACCCTTACCAACCTGGTGCAGAGCAATATCACATGTTGGAATCAGCACATTCATGGCCTCATTCACAGTTTAATGTTGCTTCTCACTATGGCCAGTCTTTTGGGGAAAACGGTCTTTTCCCACACGGGGGTTTTGGTGGCTATGGCAATAATCAGTACCCTTATCAGTTTTTTCACGGCCCTGGGGACAGGTTGATGAGGTTGGGTCCCTCGGCTACCAAGGAAGCTAGGAAGAAGAGAATGGCAAGGCAGAGAAGGTTTTTGTCTCATCATAGGAATCATAATGGTAATCACCAGCAGAATCAAGGCAATGACCCACATGCTACATTGGGTGGTGATAATTGCACCAATGTTGTGGCTGCACCTCATGCAAATCATGCAGCAAATTGGATGTACTGGCAGGCTATGACCGCTGGTGTGGCTGGTACTTTGGGGCCCGTGGTTCCTGCTGAGCCGCCGGCCGGACAACCGGTGGTGGACCGGTCCACCATTCATACACAGAATTGTCATCAGAGTCGAGTTGCATCAGATAGGAGACAGGGTTGGAAGCCTGAGAAAAACTTGAGGTTCCTTCTGCAGAAGGTGTTGAAACAAAGTGATGTGGGAAGTTTGGGGAGAATAGTTTTGCCAAAAAAAGAGGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGGGATGGCATTTCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAATATGCGCTATAGGTACTGGCCAAATAACAAGAGCAGAATGTATTTGCTCGAGAACACTGGTGATTTTGTCAGAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATACTCAGATGTGAAGTGTGGCAAATACATGATAAGGGGAGTGAAAGTGAGACAACAAGGTGTGAAACCAGAGACCAAGAAAGGAGGAAAATCACAGAAAAACCAGCATGGGACTAATGCATCAACTACAGCTGGAACTGCTGCTAATAATGGCACTCAATCGTCAACGAAGCCAAAAGCTGAAAAAAGTAGTAAATTAATATAA 2262 0.4699 MDCEVELQGGDLHAGVITEANPVGFGTMEDSHALAVSERDMWLNSDQDEFLGVNDASMFYADFPPLPDFPCMSSSSSSSSAPPLPAKTMACSTTTTTTSSSSSSSSSSWVMLRSDVEEDAEKNHCNHYMHDQLDATALSSTASMEISQQHNPDPALGGTVGECMEDVMDTFGYMELLESNDFFDPASIFQEDNEDPLVEFGTLEEQVPLHDEQHAMVHQKGKADEEDHQVPVCEEIHGEEEGGDGVGVVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKATIESAARRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENSGSISTVLQGQFQDPSVQNTHTGSFAPEPNSCFNNQTPWLSPQPFGTDQNPLMVPSQQFPQPMVGYVGDPYTSGAASNNITATHNHNNNPYQPGAEQYHMLESAHSWPHSQFNVASHYGQSFGENGLFPHGGFGGYGNNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFLSHHRNHNGNHQQNQGNDPHATLGGDNCTNVVAAPHANHAANWMYWQAMTAGVAGTLGPVVPAEPPAGQPVVDRSTIHTQNCHQSRVASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPETKKGGKSQKNQHGTNASTTAGTAANNGTQSSTKPKAEKSSKLI 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02400 753 MobiDBLite consensus disorder prediction 718 747 - -
Pste5g02400 753 Pfam B3 DNA binding domain 602 698 IPR003340 GO:0003677
Pste5g02400 753 MobiDBLite consensus disorder prediction 705 753 - -
Pste5g02400 753 MobiDBLite consensus disorder prediction 72 110 - -
Pste5g02400 753 Gene3D - 597 714 IPR015300 -
Pste5g02400 753 FunFam B3 domain-containing transcription factor FUS3 597 712 - -
Pste5g02400 753 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 258 731 IPR044800 GO:0003700
Pste5g02400 753 MobiDBLite consensus disorder prediction 500 520 - -
Pste5g02400 753 MobiDBLite consensus disorder prediction 503 520 - -
Pste5g02400 753 SMART B3_2 601 703 IPR003340 GO:0003677
Pste5g02400 753 CDD BfiI_C_EcoRII_N_B3 599 700 - -
Pste5g02400 753 SUPERFAMILY DNA-binding pseudobarrel domain 600 696 IPR015300 -
Pste5g02400 753 ProSiteProfiles B3 DNA-binding domain profile. 601 703 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02400 Pste-Chr5 16563633 16566842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02400 39 743 B3 DNA Binding Superfamily AT3G24650 47.974 2.44e-169 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste5g02400 B3 3.5e-18 CL0405